View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17003_high_13 (Length: 348)
Name: NF17003_high_13
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_13 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0728 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 30613907 - 30614236
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttctctccacttcc |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30613907 |
gacatcatcaacatcaatatgcaacaccacatataataataacaacctacattctactaccaactcctcctcccacacccgtaaacttctctccacttcc |
30614006 |
T |
|
| Q |
120 |
acgcctcccccctcgtcccaccgcaagttaaatatttgtgccaccatgttgcatatttattttttgataaatcaaataaccgacgaaaacaaacctgaag |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
30614007 |
acgcctcccccctcgtcccaccccaagttaaatatttgcgccaccgtgttgcatatttattttctgataaatcaaataaccgacaaaaacgaacctgaag |
30614106 |
T |
|
| Q |
220 |
aggaacgtcacctacctgttaatgttttattaacgaaaaaatttattaataaccaaatctctgcacagtattcttt-nnnnnnngtccatatacaagaat |
318 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||| ||||||||||| |
|
|
| T |
30614107 |
aggaacgtcgcctacctgttaatattttattaacagaaaagtttattaataaccaaatctctgcgcaatattctttgaaaaaaagtccctatacaagaat |
30614206 |
T |
|
| Q |
319 |
aacagagaccgcgaaacagaaacatgtaat |
348 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
30614207 |
aacagagacagcgaaacagaaacatgtaat |
30614236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 10382788 - 10382713
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccac |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
10382788 |
gacatcatcaacattaacctgcaacaccacagttagtaataacaacctagattcccctaacaactcctcctcccac |
10382713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 17185729 - 17185679
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctaca |
70 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||||||| | ||||||| |
|
|
| T |
17185729 |
gacatcatcaacattaacctgcaacacaacattcaataatagcgacctaca |
17185679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 1536 - 1426
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccactt |
117 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
1536 |
gacatcatcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccactt |
1438 |
T |
|
| Q |
118 |
ccacgcctcccc |
129 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1437 |
ccatgcctcccc |
1426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 6476 - 6366
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccactt |
117 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
6476 |
gacatcatcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccactt |
6378 |
T |
|
| Q |
118 |
ccacgcctcccc |
129 |
Q |
| |
|
||| |||||||| |
|
|
| T |
6377 |
ccatgcctcccc |
6366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 25094760 - 25094807
Alignment:
| Q |
174 |
atttattttttgataaatcaaataaccgacgaaaacaaacctgaagag |
221 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
25094760 |
atttattttctgataaaataaataagcgacgaaaacaaacctgaagag |
25094807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1073776 - 1073826
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctaca |
70 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| |||||||||||| |||||| |
|
|
| T |
1073776 |
gacatcatcaacattaacctgcaatacaacagacaataataacatcctaca |
1073826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 17620287 - 17620369
Alignment:
| Q |
59 |
taacaacctacattttactaccaactcctcctcccacacccgtaaacttct-ctccacttccacgcctc-ccccctcgtccca |
139 |
Q |
| |
|
|||||||||||| | | |||||||||||| ||||||| ||| || || || ||||||||||||||||| ||||||||||||| |
|
|
| T |
17620287 |
taacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctccccctcgtccca |
17620369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 13897204 - 13897252
Alignment:
| Q |
238 |
ttaatgttttattaacgaaaaaatttattaataaccaaatctctgcaca |
286 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
13897204 |
ttaatatttttttaacgataaaatttattaataactaaatatctgcaca |
13897252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University