View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_high_15 (Length: 341)
Name: NF17003_high_15
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 20670547 - 20670867
Alignment:
| Q |
1 |
actccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatct |
100 |
Q |
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| T |
20670547 |
actccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatct |
20670646 |
T |
|
| Q |
101 |
cacatccatcacttagcctaacactcttcatccctcgacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctca |
200 |
Q |
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| T |
20670647 |
cccatccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctca |
20670746 |
T |
|
| Q |
201 |
acgtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccggt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670747 |
acgtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccggt |
20670846 |
T |
|
| Q |
301 |
aatttcacccttgatgatgtc |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20670847 |
aatttcacccttgatgatgtc |
20670867 |
T |
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