View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_high_16 (Length: 339)
Name: NF17003_high_16
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 39076154 - 39076443
Alignment:
| Q |
21 |
acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagnnnnnnnnnnnnnnnnnngcatttatgaaaaagtaaaacaagt |
120 |
Q |
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| T |
39076154 |
acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagttttttttt---------gcatttatgaaaaagtaaaacaagt |
39076244 |
T |
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| Q |
121 |
gcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtcttc |
220 |
Q |
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| T |
39076245 |
gcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtcttc |
39076344 |
T |
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| Q |
221 |
attcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaatacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc |
319 |
Q |
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| T |
39076345 |
attcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaaaacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc |
39076443 |
T |
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