View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_high_4 (Length: 383)
Name: NF17003_high_4
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 383
Target Start/End: Complemental strand, 14258499 - 14258138
Alignment:
| Q |
22 |
catcatcatcatcttcttcgttacttcgccaccaccaccatgcctccactactcacaaacacacatcactatcattacttacttcctccttcaacctctc |
121 |
Q |
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| T |
14258499 |
catcatcatcatcttcttcgttacttcgccacaaccaccatgcctccactactcacaaacacacatcactatcattacttacttcctccttcaacctctc |
14258400 |
T |
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| Q |
122 |
acaaccgccatcaccaccgtcaccgccactgccaccaacctctaatcacattctcctccgtcaaccgccaccatttcaccctctcttcttccaaacgcat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14258399 |
acaaccgccatcaccaccgtcaccgccactgccaccaacctcttatcacattctcctccgtcaaccgccaccatttcaccctctcttcttccaaacgcat |
14258300 |
T |
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| Q |
222 |
tctcttatcctcttcaataaaatcatcttccatcaatgaagtttcaatccacaacaattcagaatcagcttccaatgcttctaacgagtttcttgacaga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14258299 |
tctcttatcctcttcaataaaatcatcttccatcaatgaagtttcaatccacaacaattcagaatcagcttccaatgcttctgacgagtttcttgacaga |
14258200 |
T |
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| Q |
322 |
atacgcaaattggtttctttccttccttctattttccctggaggaacatggtggaacttctc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14258199 |
atacgcaaattggtttctttccttccttctattttccctggaggaacatggtggaacttctc |
14258138 |
T |
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