View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17003_high_5 (Length: 371)
Name: NF17003_high_5
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 17075404 - 17075755
Alignment:
| Q |
1 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| || ||||| |||||||||| ||| ||||||||||| |
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| T |
17075404 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcggaagaaagtg |
17075503 |
T |
|
| Q |
101 |
aatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcga |
200 |
Q |
| |
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|| || || ||||| ||||||||||||||| |||| |||||||||||| ||||||| |||||||||||| | |||||||| || ||||||||||||| || |
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| T |
17075504 |
aacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatctaaattga |
17075603 |
T |
|
| Q |
201 |
gaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattg |
300 |
Q |
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||||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||| |||||||||||||| |
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| T |
17075604 |
gaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaacaatgattg |
17075703 |
T |
|
| Q |
301 |
ggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgtc |
352 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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|
| T |
17075704 |
ggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11053478 - 11053702
Alignment:
| Q |
1 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagtg |
100 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||| || || || | | || || ||||||||||| |
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| T |
11053478 |
tggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgtgcaaacaatcggaagaaagtg |
11053577 |
T |
|
| Q |
101 |
aatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcga |
200 |
Q |
| |
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|||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
11053578 |
aatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatctaaatcga |
11053677 |
T |
|
| Q |
201 |
gaaaattacaaggttcggatcgtct |
225 |
Q |
| |
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| |||||||||||||| || ||||| |
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| T |
11053678 |
ggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
221 |
cgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgc |
320 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
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|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
321 |
atgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
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||| ||||||||| || ||| |||||||||| |
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|
| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 90 - 351
Target Start/End: Complemental strand, 17684166 - 17683905
Alignment:
| Q |
90 |
ggaagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaa |
189 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
17684166 |
ggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaa |
17684067 |
T |
|
| Q |
190 |
atctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagtt |
289 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||| |
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|
| T |
17684066 |
atctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggtt |
17683967 |
T |
|
| Q |
290 |
aacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| |
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| T |
17683966 |
aataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 336
Target Start/End: Complemental strand, 36160146 - 36159902
Alignment:
| Q |
92 |
aagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaat |
191 |
Q |
| |
|
||||||||| |||| |||||||| || ||||||| ||||||||| || ||||| |||| || | || ||| | || || ||||| || ||| |||||| |
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|
| T |
36160146 |
aagaaagtggatggtatcttgcgacattcggtgaatagtttgaaaaaagtggcaaggttaccgaccaatgattgatcaacagttttgcacattctaaaat |
36160047 |
T |
|
| Q |
192 |
ctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaa |
291 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||| ||| ||| ||||| || || | |||||||| |
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| T |
36160046 |
ctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagttcttcttcatgttcagttaa |
36159947 |
T |
|
| Q |
292 |
caatgattgggttaattgggtggctgtgcatgggaatgagaaggt |
336 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
36159946 |
caacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17684255 - 17684197
Alignment:
| Q |
1 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggccta |
59 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| | |||||||||| |||||| |
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|
| T |
17684255 |
tggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggccta |
17684197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 26741885 - 26741535
Alignment:
| Q |
1 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagtg |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||||| ||||| | ||||| ||| || | || || | ||||| ||| ||||||||||| |
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|
| T |
26741885 |
tggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcggaagaaagtg |
26741786 |
T |
|
| Q |
101 |
aatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcga |
200 |
Q |
| |
|
|||| |||||| ||| || |||||||||||||||| ||||||| ||| |||| | |||||||||||||| |||||||| || ||||||||||| |||| |
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|
| T |
26741785 |
aatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatctaagtcga |
26741686 |
T |
|
| Q |
201 |
gaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattg |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || ||||| ||||||||||| ||||| |
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| T |
26741685 |
gaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaacaacgattg |
26741586 |
T |
|
| Q |
301 |
ggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26741585 |
ggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 69 - 349
Target Start/End: Original strand, 10559722 - 10560002
Alignment:
| Q |
69 |
ccagttccatcgttaataagaggaagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttc |
168 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| || | ||||||| ||||||| || |
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|
| T |
10559722 |
ccagtaccattgttaacaagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatc |
10559821 |
T |
|
| Q |
169 |
caccgttttacatattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggt |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| |||||| |
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| T |
10559822 |
caccgttttacacatcttaaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggt |
10559921 |
T |
|
| Q |
269 |
agttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgat |
349 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
10559922 |
agttcttcctcgggttcagataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10558428 - 10558491
Alignment:
| Q |
1 |
tggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgca |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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|
| T |
10558428 |
tggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgca |
10558491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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