View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17003_high_9 (Length: 357)

Name: NF17003_high_9
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17003_high_9
NF17003_high_9
[»] chr5 (19 HSPs)
chr5 (200-357)||(42061486-42061643)
chr5 (200-349)||(28442032-28442181)
chr5 (200-349)||(31862872-31863021)
chr5 (200-328)||(14376706-14376834)
chr5 (200-357)||(22937898-22938055)
chr5 (246-357)||(43490839-43490950)
chr5 (246-355)||(32837129-32837238)
chr5 (246-357)||(37214812-37214923)
chr5 (200-309)||(14016927-14017036)
chr5 (196-309)||(17747613-17747726)
chr5 (199-291)||(21827949-21828042)
chr5 (200-291)||(21336650-21336742)
chr5 (231-309)||(7624288-7624366)
chr5 (200-292)||(28788309-28788401)
chr5 (127-197)||(23277743-23277813)
chr5 (202-291)||(39191333-39191422)
chr5 (235-348)||(2837527-2837641)
chr5 (200-264)||(7270241-7270305)
chr5 (128-183)||(19567471-19567527)
[»] chr4 (41 HSPs)
chr4 (199-357)||(5721814-5721972)
chr4 (200-357)||(33410805-33410962)
chr4 (200-357)||(5669628-5669785)
chr4 (200-350)||(3798646-3798796)
chr4 (199-349)||(18910603-18910753)
chr4 (200-357)||(19865486-19865643)
chr4 (200-357)||(15431164-15431321)
chr4 (200-357)||(15437778-15437935)
chr4 (200-349)||(9716951-9717100)
chr4 (200-349)||(12237354-12237503)
chr4 (201-357)||(19861130-19861286)
chr4 (200-328)||(37104113-37104241)
chr4 (246-353)||(49269781-49269888)
chr4 (200-308)||(56198029-56198137)
chr4 (250-349)||(40617663-40617762)
chr4 (200-309)||(56194722-56194831)
chr4 (237-357)||(53093758-53093878)
chr4 (200-309)||(47114776-47114885)
chr4 (246-349)||(5680515-5680618)
chr4 (200-305)||(15405793-15405898)
chr4 (246-318)||(14571072-14571144)
chr4 (200-309)||(33926121-33926230)
chr4 (198-309)||(29323977-29324088)
chr4 (200-309)||(44809795-44809904)
chr4 (200-291)||(12782106-12782197)
chr4 (200-276)||(44164001-44164078)
chr4 (200-291)||(3718336-3718427)
chr4 (200-291)||(15430674-15430766)
chr4 (200-291)||(15437288-15437380)
chr4 (208-291)||(21418987-21419070)
chr4 (200-291)||(27013229-27013321)
chr4 (198-276)||(27677889-27677968)
chr4 (205-306)||(34320738-34320839)
chr4 (237-291)||(37741471-37741525)
chr4 (200-276)||(52007355-52007431)
chr4 (241-309)||(15812973-15813041)
chr4 (208-291)||(40794200-40794283)
chr4 (128-199)||(11863758-11863829)
chr4 (200-291)||(27691933-27692025)
chr4 (199-276)||(53010382-53010459)
chr4 (199-269)||(19819949-19820020)
[»] chr3 (30 HSPs)
chr3 (199-357)||(18645584-18645742)
chr3 (200-357)||(538015-538172)
chr3 (199-349)||(52198304-52198454)
chr3 (200-325)||(10107489-10107614)
chr3 (200-357)||(10884018-10884175)
chr3 (200-357)||(23299396-23299553)
chr3 (200-357)||(6921890-6922047)
chr3 (199-304)||(17532565-17532670)
chr3 (246-350)||(35411723-35411827)
chr3 (200-345)||(16185511-16185656)
chr3 (200-291)||(53814971-53815062)
chr3 (223-357)||(22994435-22994569)
chr3 (199-350)||(29344622-29344774)
chr3 (284-328)||(55032789-55032833)
chr3 (246-309)||(19302255-19302318)
chr3 (200-310)||(3839790-3839903)
chr3 (128-199)||(30059979-30060050)
chr3 (199-269)||(54460366-54460436)
chr3 (201-269)||(9380012-9380080)
chr3 (199-291)||(16243165-16243257)
chr3 (200-276)||(20729400-20729477)
chr3 (246-302)||(19305445-19305501)
chr3 (251-290)||(17529546-17529585)
chr3 (200-290)||(34984668-34984758)
chr3 (208-269)||(54736781-54736842)
chr3 (130-171)||(5698386-5698427)
chr3 (312-349)||(9380143-9380180)
chr3 (200-276)||(10880776-10880852)
chr3 (200-276)||(41976321-41976397)
chr3 (237-269)||(11636146-11636178)
[»] chr8 (18 HSPs)
chr8 (200-357)||(18722152-18722310)
chr8 (192-357)||(25595527-25595693)
chr8 (200-349)||(33878089-33878238)
chr8 (204-357)||(25592342-25592496)
chr8 (200-357)||(10663011-10663168)
chr8 (198-350)||(43682647-43682800)
chr8 (246-357)||(45156761-45156872)
chr8 (246-357)||(5540838-5540949)
chr8 (246-350)||(14420910-14421014)
chr8 (246-357)||(25228060-25228169)
chr8 (199-309)||(14589707-14589817)
chr8 (200-282)||(23612569-23612651)
chr8 (200-309)||(22174782-22174891)
chr8 (200-309)||(18826725-18826834)
chr8 (237-310)||(38249248-38249321)
chr8 (199-263)||(19792925-19792990)
chr8 (200-276)||(30640505-30640583)
chr8 (237-310)||(37681629-37681701)
[»] chr7 (21 HSPs)
chr7 (200-349)||(26556510-26556659)
chr7 (200-349)||(10431386-10431535)
chr7 (200-355)||(2442122-2442277)
chr7 (200-355)||(4542074-4542229)
chr7 (199-357)||(8276011-8276169)
chr7 (199-309)||(48644615-48644725)
chr7 (200-309)||(16164889-16164998)
chr7 (199-309)||(6602620-6602730)
chr7 (199-269)||(48645852-48645922)
chr7 (200-291)||(45288047-45288138)
chr7 (200-291)||(45291383-45291474)
chr7 (195-298)||(17729968-17730071)
chr7 (200-310)||(20081530-20081640)
chr7 (128-199)||(20465539-20465610)
chr7 (199-349)||(9865493-9865643)
chr7 (128-199)||(9257384-9257455)
chr7 (128-199)||(9312798-9312869)
chr7 (148-199)||(11231020-11231071)
chr7 (246-291)||(9080422-9080467)
chr7 (235-350)||(9273885-9274000)
chr7 (128-172)||(16202955-16202999)
[»] chr6 (16 HSPs)
chr6 (204-357)||(23388995-23389149)
chr6 (204-357)||(23379656-23379810)
chr6 (200-355)||(5739034-5739190)
chr6 (200-355)||(34501416-34501569)
chr6 (199-357)||(9953035-9953193)
chr6 (201-336)||(2371414-2371549)
chr6 (200-309)||(31071494-31071603)
chr6 (234-309)||(13004433-13004509)
chr6 (237-307)||(6512433-6512503)
chr6 (199-276)||(28666100-28666177)
chr6 (241-309)||(28112641-28112709)
chr6 (199-291)||(10289185-10289277)
chr6 (237-298)||(12991556-12991617)
chr6 (238-310)||(14282373-14282445)
chr6 (317-349)||(13004611-13004643)
chr6 (237-269)||(13022212-13022244)
[»] scaffold0035 (1 HSPs)
scaffold0035 (200-357)||(61597-61754)
[»] chr1 (13 HSPs)
chr1 (200-355)||(49499413-49499568)
chr1 (200-357)||(2793299-2793456)
chr1 (200-355)||(1951190-1951345)
chr1 (246-357)||(29644151-29644262)
chr1 (199-309)||(31204013-31204123)
chr1 (240-357)||(34733106-34733223)
chr1 (199-309)||(6071791-6071896)
chr1 (199-298)||(41059135-41059235)
chr1 (199-309)||(45961598-45961708)
chr1 (201-309)||(27537104-27537212)
chr1 (200-276)||(2404722-2404798)
chr1 (200-276)||(21019292-21019367)
chr1 (200-291)||(42021721-42021812)
[»] chr2 (24 HSPs)
chr2 (200-357)||(26358672-26358829)
chr2 (200-357)||(36809278-36809435)
chr2 (200-357)||(38006129-38006286)
chr2 (200-350)||(25821767-25821922)
chr2 (200-357)||(25869835-25869992)
chr2 (200-357)||(25873203-25873360)
chr2 (200-350)||(30275541-30275691)
chr2 (200-328)||(15466170-15466298)
chr2 (246-357)||(25139883-25139994)
chr2 (200-328)||(29439597-29439723)
chr2 (200-349)||(16788389-16788537)
chr2 (203-309)||(36985626-36985732)
chr2 (200-309)||(45456300-45456409)
chr2 (199-309)||(45453050-45453160)
chr2 (200-309)||(38014636-38014745)
chr2 (200-291)||(10599951-10600042)
chr2 (199-309)||(31430529-31430639)
chr2 (200-275)||(5665830-5665905)
chr2 (147-199)||(9961189-9961241)
chr2 (245-309)||(31428340-31428404)
chr2 (200-291)||(3874482-3874573)
chr2 (199-276)||(5104952-5105027)
chr2 (202-291)||(13136764-13136853)
chr2 (200-276)||(43722904-43722980)
[»] scaffold0005 (2 HSPs)
scaffold0005 (211-357)||(290974-291120)
scaffold0005 (246-318)||(246232-246304)
[»] scaffold0334 (1 HSPs)
scaffold0334 (199-324)||(18462-18588)
[»] scaffold0045 (1 HSPs)
scaffold0045 (200-306)||(88965-89071)
[»] scaffold0080 (1 HSPs)
scaffold0080 (286-357)||(26331-26402)
[»] scaffold1684 (1 HSPs)
scaffold1684 (200-305)||(369-474)
[»] scaffold0002 (1 HSPs)
scaffold0002 (127-189)||(367389-367451)
[»] scaffold0015 (1 HSPs)
scaffold0015 (200-316)||(197242-197358)
[»] scaffold0757 (1 HSPs)
scaffold0757 (200-291)||(4563-4654)
[»] scaffold0381 (1 HSPs)
scaffold0381 (200-291)||(6462-6554)
[»] scaffold0270 (3 HSPs)
scaffold0270 (200-291)||(969-1060)
scaffold0270 (200-291)||(4329-4420)
scaffold0270 (200-291)||(11459-11550)
[»] scaffold0039 (1 HSPs)
scaffold0039 (147-199)||(8785-8837)
[»] scaffold0520 (1 HSPs)
scaffold0520 (200-290)||(4790-4880)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 42061486 - 42061643
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42061486 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagat 42061585  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42061586 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcaca 42061643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 28442181 - 28442032
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataagat 28442082  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  28442081 tttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgattt 28442032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 31862872 - 31863021
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||    
T  31862872 tgatgacagtcagtcattccttatttttagtgtcattttcataatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaaat 31862971  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31862972 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattt 31863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 14376834 - 14376706
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||    
T  14376834 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaatcaagaaaaatagaagat 14376735  T
Q  300 tttgaagaaagcaaaatcgtgtcacgatt 328  Q
    ||||| ||||||||| |||||||||||||    
T  14376734 tttgaggaaagcaaattcgtgtcacgatt 14376706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 22938055 - 22937898
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||| |||||||   |||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||||||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaaga 22937957  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||| |||| |||||||||| || |||||||||| ||||||    
T  22937956 ttttgaagaaagcaaaatcgtgccacggttgttgaaaacgtatcacgatttggagcaca 22937898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 43490839 - 43490950
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||| ||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43490839 ttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacg 43490938  T
Q  346 atttgaagcaca 357  Q
    ||| | ||||||    
T  43490939 attaggagcaca 43490950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 32837129 - 32837238
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||||||||||||| ||||||  |||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  32837129 ttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaatagaagattttgaagaaagcaaaatcgtgtcatgattgttgaaaacgtgtcacg 32837228  T
Q  346 atttgaagca 355  Q
    ||||| ||||    
T  32837229 atttggagca 32837238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 37214812 - 37214923
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||    
T  37214812 ttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcaaaatcgtatcacaattgttgaaaacatgtcacg 37214911  T
Q  346 atttgaagcaca 357  Q
    ||||| ||||||    
T  37214912 atttggagcaca 37214923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 14017036 - 14016927
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  14017036 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 14016938  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  14016937 ttttgaagaaa 14016927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 17747613 - 17747726
Alignment:
Q  196 tatctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatag 294  Q
    ||||||||||||||||||||||  || ||||||| ||| |||| |||||| ||||||||||| ||| |||||||| || ||| |||| || ||||||||     
T  17747613 tatctgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcataagaaagcttaaacaacaaggaaagcatgaaaaatac 17747711  T
Q  295 aagattttgaagaaa 309  Q
    |||||||||||||||    
T  17747712 aagattttgaagaaa 17747726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 21828042 - 21827949
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||| || ||||||| ||| |||| |||||| |||||||||| ||||||||||||| ||||||  ||| |||||||||    
T  21828042 ctgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaa 21827949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 21336742 - 21336650
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| ||||||| ||| |||| || ||| |||||||||||||||||||||||| || |||  ||| |||||||||    
T  21336742 tgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 21336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 7624288 - 7624366
Alignment:
Q  231 gtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    |||||||| ||||| ||||||||||||| |||||||||| || ||| |||| || |||||||| |||||||||||||||    
T  7624288 gtcattttaatgatgttttgagttcacaggcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 7624366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 28788401 - 28788309
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttg-agttcacaagcaagcttaaccagcaaagaaaacaagaaaaat 292  Q
    ||||||||||||||||||  || ||||||| ||| |||| ||||||||||  ||||||||||||||||||| ||||||  ||||||||||||||    
T  28788401 tgatgacagtcagtcatttgctatttttagagtcttttt-atgatattttttagttcacaagcaagcttaagcagcaagaaaaacaagaaaaat 28788309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 23277813 - 23277743
Alignment:
Q  127 acatttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcata 197  Q
    |||||||| |||||||||| ||||||||||||| ||| |||||| ||||||||| || || ||| ||||||    
T  23277813 acatttagtataatttgcatttaaagacgattacgcactttcactaagttaatccattcaacatatgcata 23277743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 39191333 - 39191422
Alignment:
Q  202 atgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||| |||||   | ||||||| ||| |||| |||||| |||||||||||||||||||||||| ||||||  |||||||||||||    
T  39191333 atgacagtcaatcatttgttatttttagagtcttttt-atgatacttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 39191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 2837641 - 2837527
Alignment:
Q  235 ttttcatgatattttg-agttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttga 333  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||  ||| |||||||||  |||||   |||||||||   |||| ||||||||||  |||    
T  2837641 tttttatgatattttggagttcacaagcaagcttaagcagcaataaaagcaagaaaaactgaagaaactgaagaaag-ggaatcatgtcacgattactga 2837543  T
Q  334 aaaa-gtgtcacgatt 348  Q
    |||| |||||||||||    
T  2837542 aaaacgtgtcacgatt 2837527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 7270241 - 7270305
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaag 264  Q
    ||||||||||| ||||||| || ||||||| ||| |||| |||||| |||||||||||||||||||    
T  7270241 tgatgacagtctgtcattcgctatttttagagtc-tttttatgatatttttgagttcacaagcaag 7270305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 19567527 - 19567471
Alignment:
Q  128 catttagcataatttgcaatt-aaagacgattaagcattttcaccaagttaatcaat 183  Q
    ||||||||| |||||||| || ||||||||||||| | |||||| ||||||||||||    
T  19567527 catttagcacaatttgcattttaaagacgattaagtactttcactaagttaatcaat 19567471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 199 - 357
Target Start/End: Complemental strand, 5721972 - 5721814
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  5721972 ctgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttcaagttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaaga 5721873  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5721872 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcaca 5721814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 33410962 - 33410805
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  33410962 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 33410863  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  33410862 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgttacgatttgaagcaca 33410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 5669628 - 5669785
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  5669628 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 5669727  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  5669728 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttgaaacaca 5669785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 3798796 - 3798646
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaagcaagaaaaatagaagat 3798697  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttg 350  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  3798696 tttgaagaaagcaaaatcttgtcacgattgttgaaaatgtgtcacgatttg 3798646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 199 - 349
Target Start/End: Original strand, 18910603 - 18910753
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||    
T  18910603 ctgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaaacttaaacaacaaagaaagcaagaaaaatagaaga 18910702  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18910703 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattt 18910753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 19865643 - 19865486
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  19865643 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagat 19865544  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||| |||||||||||||||||| ||||||| || |||||||||| ||||||    
T  19865543 tttgaagaaaacaaaatcgtgtcacgattattgaaaatgtatcacgatttggagcaca 19865486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 15431164 - 15431321
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  15431164 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 15431263  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  15431264 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 15431321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 15437778 - 15437935
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  15437778 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 15437877  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  15437878 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 15437935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 9716951 - 9717100
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  9716951 tgatgacagtcggtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 9717050  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    || |||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  9717051 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacaattt 9717100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 12237354 - 12237503
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||    
T  12237354 tgatgatagtcattcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagagaaatagaagat 12237453  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  12237454 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaatgtgtcacaattt 12237503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 19861286 - 19861130
Alignment:
Q  201 gatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagatt 300  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||    
T  19861286 gatggcagacagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaagcaagaaaaatataagatt 19861187  T
Q  301 ttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||  |||||| ||||||||||||||||||| || |||||||||| ||||||    
T  19861186 ttgaagaacacaaaattgtgtcacgattgttgaaaacgtatcacgatttggagcaca 19861130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 37104241 - 37104113
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37104241 tgatgacactcagtcattcactgtgtttagtatcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagat 37104142  T
Q  300 tttgaagaaagcaaaatcgtgtcacgatt 328  Q
    |||||||||||||||||||||||||||||    
T  37104141 tttgaagaaagcaaaatcgtgtcacgatt 37104113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 49269781 - 49269888
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||  ||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  49269781 ttttgagttagcaaacaagcttaaacggcaaagaaagcaagaaaaatagaagattttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacg 49269880  T
Q  346 atttgaag 353  Q
    ||||||||    
T  49269881 atttgaag 49269888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 56198029 - 56198137
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| || ||||||||||||||    
T  56198029 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagat 56198128  T
Q  300 tttgaagaa 308  Q
    |||||||||    
T  56198129 tttgaagaa 56198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 40617762 - 40617663
Alignment:
Q  250 gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    |||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  40617762 gagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaggcaaaatcgtgccacgattgttgaaaacgtgtcacgattt 40617663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 56194722 - 56194831
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||| ||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| || ||||||||||||||    
T  56194722 tgatgacagtcaatcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagat 56194821  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  56194822 tttgaagaaa 56194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 53093758 - 53093878
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaa 336  Q
    |||||| | |||||||||||||||||||||||| |||||| |||| || ||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  53093758 ttcatggtcttttgagttcacaagcaagcttaaacagcaaggaaagcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaa 53093857  T
Q  337 agtgtcacgatttgaagcaca 357  Q
     ||||||||| ||| ||||||    
T  53093858 cgtgtcacgaattggagcaca 53093878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 47114776 - 47114885
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | ||||||||||||||||||| || |||||||||||||||||||||||| ||  || ||||||| |||||||| |||||    
T  47114776 tgatgacagtcagtcattctttatttttagtgtcattttcattatgttttgagttcacaagcaagcttaaacaataaggaaaacatgaaaaatacaagat 47114875  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  47114876 tttgaagaaa 47114885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 5680515 - 5680618
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    ||||||||||| |||||||||||| || |||  ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||     
T  5680515 ttttgagttcataagcaagcttaaacaacaagaaaagcaagaaaaatagaagattttgaaaaaagcaaaatcatgtcacgattgttgaaaacgtgtcaca 5680614  T
Q  346 attt 349  Q
    ||||    
T  5680615 attt 5680618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 15405898 - 15405793
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||| ||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||  || |||||||| |||||    
T  15405898 tgatgaaagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaacgcatgaaaaatacaagat 15405799  T
Q  300 tttgaa 305  Q
    ||||||    
T  15405798 tttgaa 15405793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 14571072 - 14571144
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcg 318  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  14571072 ttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcaaaatcg 14571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 33926121 - 33926230
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||||||||||   |  |||||||||||||| |||||| | |||||||||||||||||||||| || ||| |||| || |||||||| |||||    
T  33926121 tgatgacagtcagtcatttgttacttttagtgtcatttgcatgatgtcttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 33926220  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  33926221 tttgaagaaa 33926230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 29323977 - 29324088
Alignment:
Q  198 tctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaa 296  Q
    ||||||||||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| ||    
T  29323977 tctgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaa 29324075  T
Q  297 gattttgaagaaa 309  Q
    |||||||||||||    
T  29324076 gattttgaagaaa 29324088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 44809904 - 44809795
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  44809904 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 44809806  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  44809805 ttttgaagaaa 44809795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 12782106 - 12782197
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||||||||||| || ||||||| |||||||| |||||| ||||||||| |||||||||||||| ||||||  ||| |||||||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcatttt-atgatatttttgagtttacaagcaagcttaagcagcaagaaaagcaagaaaaa 12782197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 44164001 - 44164078
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||| ||||||||||||||||||| |||| ||||||    
T  44164001 tgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaagattaagcagcaa 44164078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 3718336 - 3718427
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||| ||||||||| ||||||| || ||||| |||||||||| |||||||||||||||||||| || |||  ||| |||||||||    
T  3718336 tgatgacagtcactcattcactatttttagagt-atttttatgatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 3718427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 15430766 - 15430674
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||  | |||| || ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15430674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 15437380 - 15437288
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||  | |||| || ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 21418987 - 21419070
Alignment:
Q  208 gtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||| || ||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  21418987 gtcagtcattcgctatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 21419070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 27013229 - 27013321
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||||||||||| || ||||||| ||| |||| |||||| ||||||||||||| |||||||||| || |||  ||| |||||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 27013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 27677968 - 27677889
Alignment:
Q  198 tctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    |||||||||||||||| ||||||| ||||||| ||| |||| |||||| |||||||||||||| |||| |||| ||||||    
T  27677968 tctgatgacagtcagttattcactatttttagagtcttttttatgatatttttgagttcacaatcaagattaagcagcaa 27677889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 34320839 - 34320738
Alignment:
Q  205 acagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttg 303  Q
    |||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| ||  || |||| || |||||||| |||||||||    
T  34320839 acagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaataaggaaagcatgaaaaatacaagattttg 34320741  T
Q  304 aag 306  Q
    |||    
T  34320740 aag 34320738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 37741525 - 37741471
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  37741525 ttcatgatatttggagttcacaagcaagcttaaacagcaagaaaaacaagaaaaa 37741471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 52007431 - 52007355
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatt-ttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||| || ||||||| ||| |||| |||||||| ||||||||| |||||||||||| ||||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtc-tttttatgatattgttgagttcaaaagcaagcttaagcagcaa 52007355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 15813041 - 15812973
Alignment:
Q  241 tgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    |||| ||||||||||||||||||| |||| || ||| |||| || |||||||| |||||||||||||||    
T  15813041 tgatgttttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 15812973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 40794200 - 40794283
Alignment:
Q  208 gtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||| || ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  40794200 gtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 40794283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 11863829 - 11863758
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    |||||| || ||||| || |||||||||||||| |||||||||| ||||||||||  ||| |||||||||||    
T  11863829 catttaacacaatttacatttaaagacgattaaacattttcacctagttaatcaagtcattatgtgcatatc 11863758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 27692025 - 27691933
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||| | ||||||||||| ||||||| ||| |||| | |||||||| || |||||||||||| |||| ||||||  ||| |||||||||    
T  27692025 tgatgacaattagtcattcactatttttagagtcttttttacgatatttttgaattcacaagcaagattaagcagcaagaaaagcaagaaaaa 27691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 53010459 - 53010382
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||| ||||||||||||| | ||||||| ||| |||| |||||| ||||||||||||||| ||| |||| ||||||    
T  53010459 ctgatgatagtcagtcattcattatttttagagtc-tttttatgatatttttgagttcacaagtaagattaagcagcaa 53010382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 19819949 - 19820020
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata--ttttgagttcacaagcaagcttaa 269  Q
    |||||||||||||||||||| || ||||||  ||| |||| ||||||  ||||||||||||||||||| ||||    
T  19819949 ctgatgacagtcagtcattcgctatttttaaagtc-tttttatgatattttttgagttcacaagcaagattaa 19820020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 199 - 357
Target Start/End: Complemental strand, 18645742 - 18645584
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18645742 ctgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttcaagttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaaga 18645643  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18645642 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcaca 18645584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 538015 - 538172
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  538015 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaaacaagtttaaacagcaaagaaaacaagaaaaatagaagat 538114  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  538115 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 199 - 349
Target Start/End: Original strand, 52198304 - 52198454
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  52198304 ctgatgacagtcagtcattcactatgtttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaga 52198403  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  52198404 ttttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgattt 52198454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 10107614 - 10107489
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  10107614 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaatagaagat 10107515  T
Q  300 tttgaagaaagcaaaatcgtgtcacg 325  Q
    ||||||||||||||||||||||||||    
T  10107514 tttgaagaaagcaaaatcgtgtcacg 10107489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 10884018 - 10884175
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaatgaaaacaaaaaaaatagaagat 10884117  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    || ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  10884118 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacctgtcacgatttgaagcaca 10884175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 23299553 - 23299396
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 23299454  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  23299453 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacaatttggagcaca 23299396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 6921890 - 6922047
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||||    
T  6921890 tgatgacagtcagtcattcactatttttagagcctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatataagat 6921989  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  6921990 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 6922047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 17532670 - 17532565
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  17532670 ctgattacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaaaagaaga 17532571  T
Q  299 ttttga 304  Q
    ||||||    
T  17532570 ttttga 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 35411723 - 35411827
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaac-aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcac 344  Q
    |||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  35411723 ttttgagttcacaagcaaacttaagcagc-aagaaaacaaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcac 35411821  T
Q  345 gatttg 350  Q
    ||||||    
T  35411822 gatttg 35411827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 345
Target Start/End: Complemental strand, 16185656 - 16185511
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||| |||||||    ||||||| ||| |||| |||||||||| |||||||||| ||||||||| ||||||  ||| ||||||||||| ||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatataaga 16185558  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  16185557 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcacg 16185511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 53814971 - 53815062
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 53815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 22994569 - 22994435
Alignment:
Q  223 tttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtc 322  Q
    |||||||||| || || |||||||||||||| ||||||||||||||| |||||| |||| |||||||||  ||||||| ||  |||||  |||| ||| |    
T  22994569 tttttagtgtaatatt-atgatattttgagtccacaagcaagcttaaacagcaaggaaagcaagaaaaactgaagattgtggtgaaagtgaaatagtgac 22994471  T
Q  323 acgattgttgaaaaa-gtgtcacgatttgaagcaca 357  Q
    ||| ||||||||||| ||||||||||||| ||||||    
T  22994470 acggttgttgaaaaacgtgtcacgatttggagcaca 22994435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 29344774 - 29344622
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    ||||||||||||||||||||||| ||||||| ||| || | |||||| ||||||||||||||||||| |||| ||||||  ||| |||||||||| ||||    
T  29344774 ctgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaattgaag 29344675  T
Q  298 attttgaagaaagcaaaatcgtgtcacgattgttgaaaaa-gtgtcacgatttg 350  Q
    |   |||| ||||    |||||||||||||| |||||||| ||| |||||||||    
T  29344674 aaactgaaaaaag-gggatcgtgtcacgattattgaaaaacgtgacacgatttg 29344622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 55032833 - 55032789
Alignment:
Q  284 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032833 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 55032789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 19302318 - 19302255
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    |||||||||||||||||||||||| || ||| |||| | |||||||||||||||||||||||||    
T  19302318 ttttgagttcacaagcaagcttaaacaacaaggaaagcgagaaaaatagaagattttgaagaaa 19302255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 3839790 - 3839903
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttc--atgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaa 296  Q
    |||||||||||||||||||||| ||||||| ||  ||||   |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||  |||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaa 3839889  T
Q  297 gattttgaagaaag 310  Q
    ||  ||||||||||    
T  3839890 gaaattgaagaaag 3839903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 30060050 - 30059979
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||  ||||||||||| || ||| ||||||||    
T  30060050 catttaacataatttgcatttaaagaagattaagcattttcacttagttaatcaattcaacatatgcatatc 30059979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 54460366 - 54460436
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaa 269  Q
    ||||||||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||||||||| |||||    
T  54460366 ctgatgacagtcagtcattcactatttttagagtc-tttttatgatatttttgagttcacaagcaatcttaa 54460436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 9380012 - 9380080
Alignment:
Q  201 gatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaa 269  Q
    |||||||||||||||||| || ||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 9380080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 16243165 - 16243257
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||| |||||||||| || ||||||| ||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| |||||||||    
T  16243165 ctgatgacaatcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaa 16243257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 20729477 - 20729400
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||| || ||||||| ||  |||| |||||| |||| ||||||||||||||||||| ||||||    
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaagcttaagcagcaa 20729400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 19305501 - 19305445
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagatttt 302  Q
    |||||||||||||||||||||||| |||||| |||| | ||||||||||||| ||||    
T  19305501 ttttgagttcacaagcaagcttaaacagcaaggaaagcgagaaaaatagaagttttt 19305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 17529546 - 17529585
Alignment:
Q  251 agttcacaagcaagcttaaccagcaaagaaaacaagaaaa 290  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  17529546 agttcacaagcaagcttaaacagcaaagaaaacaagaaaa 17529585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 34984758 - 34984668
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaa 290  Q
    |||||||||||||||||||  | ||||||| ||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaa 34984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 54736842 - 54736781
Alignment:
Q  208 gtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaa 269  Q
    |||| ||||||||| ||||||| ||| |||| |||||| ||||||||||||||||||||||||    
T  54736842 gtcaatcattcactatttttagagtcttttt-atgatacttttgagttcacaagcaagcttaa 54736781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 5698427 - 5698386
Alignment:
Q  130 tttagcataatttgcaattaaagacgattaagcattttcacc 171  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
T  5698427 tttagcacaatttgcatttaaagacgattaagcactttcacc 5698386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 9380143 - 9380180
Alignment:
Q  312 aaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  9380143 aaaatcgtgtcacggttgttgaaaacgtgtcacgattt 9380180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 10880776 - 10880852
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaa 276  Q
    |||||||||||||| |||  || ||||||| ||| |||| |||||||||| ||||||||||||||| |||| ||||||    
T  10880776 tgatgacagtcagttatttgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcagcaa 10880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 41976321 - 41976397
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||| || ||||||| ||  |||| || ||||||| ||||||||||||||| |||| ||||||    
T  41976321 tgatgacagtcagtcattcgctatttttagagtgttttt-ataatatttttgagttcacaagcaagattaaacagcaa 41976397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 11636146 - 11636178
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaa 269  Q
    |||||||||||| ||||||||||||||||||||    
T  11636146 ttcatgatatttagagttcacaagcaagcttaa 11636178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 18722310 - 18722152
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga- 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||     
T  18722310 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagat 18722211  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  18722210 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 18722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 25595693 - 25595527
Alignment:
Q  192 tgcatatctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  25595693 tgcataactgacgacagtcagtcattcattgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaa 25595594  T
Q  292 tagaaga-ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  25595593 tagaagatttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 25595527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 33878238 - 33878089
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  33878238 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagaaagtttaaacagcaaagaaaacaagaaaaatagaagat 33878139  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  33878138 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaattt 33878089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 25592496 - 25592342
Alignment:
Q  204 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga-tttt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||    
T  25592496 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttt 25592397  T
Q  303 gaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  25592396 gaagaaagcaaaatcgtgtcacgattgttgaaaatgtgtcccgatttggagcaca 25592342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 10663011 - 10663168
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttttcatgatatgttgagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaagat 10663110  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||||    
T  10663111 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcatgatttggagcaca 10663168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 198 - 350
Target Start/End: Complemental strand, 43682800 - 43682647
Alignment:
Q  198 tctgatgacagtcagtcattcactgtttttagtgtcatttt-catgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaa 296  Q
    ||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  43682800 tctgatggcagtcagtcattcactatttttagtatcatttttcatgatattttgagttcataagcaagtttaaacagcaaagaaagcaagaaaaatagaa 43682701  T
Q  297 gattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttg 350  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  43682700 gattttgaagaaagcaaaatcgtgtcacgattattgaaaacgtgtcacaatttg 43682647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 45156872 - 45156761
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  45156872 ttttgagttcacaagcaagctttagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcacaatcgtgtcacgattgttgaaaatgtgtcacg 45156773  T
Q  346 atttgaagcaca 357  Q
    ||||| ||||||    
T  45156772 atttggagcaca 45156761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 5540949 - 5540838
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||||||||| ||| ||||||   ||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  5540949 ttttgagttcacaagcaagcataagcagcaagacaagtaagaaaaatagaagattttgaaggaagcaaaatcatgtcacgattgttgaaaacgtgtcacg 5540850  T
Q  346 atttgaagcaca 357  Q
    ||||||||||||    
T  5540849 atttgaagcaca 5540838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 14420910 - 14421014
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||| ||||||||||||||||||| || |||  ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14420910 tttttagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataagattttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacg 14421009  T
Q  346 atttg 350  Q
    |||||    
T  14421010 atttg 14421014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 25228060 - 25228169
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    ||||||||||||||||||||| ||  |||||  |||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||    
T  25228060 ttttgagttcacaagcaagctcaagaagcaagaaaaacaagaaaaatagaagattttgaagaaa--aaaatcgtgtctcgattgctgaaaacgtgtcacg 25228157  T
Q  346 atttgaagcaca 357  Q
    ||||| ||||||    
T  25228158 atttggagcaca 25228169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 14589817 - 14589707
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||  || ||| |||| || |||||||| ||||    
T  14589817 ctgatgatagttagtcattcattatttttagtgtcattttcatgatgttttgagttcacaagcaagcttacacaacaaggaaagcatgaaaaatacaaga 14589718  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  14589717 ttttgaagaaa 14589707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 23612569 - 23612651
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaa 282  Q
    |||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||    
T  23612569 tgatgacagtcagtcattcactatttttagtgtcattttgatgagattttgagttcacaagcaagtttaaacagcaaagaaaa 23612651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 22174891 - 22174782
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||| |||||| | |||| ||||||||||||||||| |||| |||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  22174891 tgatgacagtcagccattcattatttt-agtgtcattttcatgatgtttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 22174793  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  22174792 ttttgaagaaa 22174782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 18826834 - 18826725
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||| ||||| || ||| |||| || |||||||| ||||    
T  18826834 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaaacttaaacaacaaggaaagcatgaaaaatacaaga 18826736  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  18826735 ttttgaagaaa 18826725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 38249321 - 38249248
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaag 310  Q
    |||||||| |||||| ||||||||||||||||| |||||| ||||||| ||||| |  ||||||||||||||||    
T  38249321 ttcatgatcttttgaattcacaagcaagcttaaacagcaaggaaaacatgaaaagttaaagattttgaagaaag 38249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 19792925 - 19792990
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaa 263  Q
    |||||||||||| | |||||||| ||||||| ||| |||| |||||| ||||||||||||||||||    
T  19792925 ctgatgacagtcggccattcactatttttagagtcttttttatgatatttttgagttcacaagcaa 19792990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 30640505 - 30640583
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttc-atgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    |||||||||||| ||||||||| |||| ||  || ||||  |||||| |||||||||||||||||||||||| ||||||    
T  30640505 tgatgacagtcaatcattcactattttaagaatctttttttatgatacttttgagttcacaagcaagcttaagcagcaa 30640583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 37681701 - 37681629
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaag 310  Q
    |||||||| ||||||||||||| | ||||||||  ||||| ||||| | ||||| | |||||||||||||||||    
T  37681701 ttcatgatcttttgagttcaca-gtaagcttaaagagcaaggaaaatatgaaaagttgaagattttgaagaaag 37681629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 26556510 - 26556659
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  26556510 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagat 26556609  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26556610 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattt 26556659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 10431386 - 10431535
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  10431386 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataagat 10431485  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  10431486 tttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgattt 10431535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 2442277 - 2442122
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  2442277 tgatgacagtcagtcattcactattttaagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 2442178  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    | ||| ||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  2442177 tctgaggaaagcaaattcgtgtcacgattgttgaaaacgtatcacgatttgaagca 2442122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 200 - 355
Target Start/End: Original strand, 4542074 - 4542229
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 4542173  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    ||||| ||||||||| | ||||||||||||||||||| |||||| |||||| ||||    
T  4542174 tttgaggaaagcaaatttgtgtcacgattgttgaaaatgtgtcatgatttggagca 4542229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 8276011 - 8276169
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    |||||||||||| |||||||  | ||||||| ||| |||| |||||||||| ||||||||||||||||| || ||||||  ||| |||||||||||||||    
T  8276011 ctgatgacagtctgtcattccatatttttagagtcttttt-atgatatttttgagttcacaagcaagctcaagcagcaagaaaagcaagaaaaatagaag 8276109  T
Q  298 attttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||| ||||||||||||| |||||||||||| || |||||||||| ||||||    
T  8276110 attttgaagaaaacaaaatcgtgtcatgattgttgaaaacgtatcacgatttggagcaca 8276169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 48644615 - 48644725
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||||  | ||||||||||||||||||| || |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  48644615 ctgatgacagtcagtcattctttatttttagtgtcattttcataatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 48644714  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  48644715 ttttgaagaaa 48644725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 16164889 - 16164998
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| |||||||||||||||||||||||| || ||| |||| || |||||||| |||||    
T  16164889 tgatgacagtcagtcattcgttatttttagtgtaattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 16164988  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  16164989 tttgaagaaa 16164998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 6602620 - 6602730
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||||  | ||||||||||||| ||||| || |||| ||||||||||||||||||| || ||| ||||  | |||||||| ||||    
T  6602620 ctgatgacagtcagtcattcgttatttttagtgtcatgttcataatgttttaagttcacaagcaagcttaaacaacaaggaaagtatgaaaaatacaaga 6602719  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  6602720 ttttgaagaaa 6602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 48645922 - 48645852
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaa 269  Q
    ||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48645922 ctgatgacagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaa 48645852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 45288138 - 45288047
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45288047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 45291474 - 45291383
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  45291474 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45291383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 17729968 - 17730071
Alignment:
Q  195 atatctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaata 293  Q
    |||| ||||||||||||||| |||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||     
T  17729968 atatatgatgacagtcagtctttcactatttttagagtcctttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatc 17730066  T
Q  294 gaaga 298  Q
    |||||    
T  17730067 gaaga 17730071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 20081640 - 20081530
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    |||||||||||||||||||||| ||||||| ||  |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||  ||||    
T  20081640 tgatgacagtcagtcattcactatttttagagtgttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatcaaaga 20081542  T
Q  299 ttttgaagaaag 310  Q
      ||||||||||    
T  20081541 aattgaagaaag 20081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 20465539 - 20465610
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    ||||||||| || ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  20465539 catttagcacaaattgcatttaaagactattaaggattttcaccaagtaaatcaatacatcatgtgcatatc 20465610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 349
Target Start/End: Complemental strand, 9865643 - 9865493
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    |||||||||||||||||||| || ||||||| ||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| |||||||||  ||||    
T  9865643 ctgatgacagtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaactgaag 9865545  T
Q  298 attttgaagaaagcaaaatcgtgtcacgattgttgaaaaa-gtgtcacgattt 349  Q
    |   |||| |||| |  |||||||||||||| |||||||| ||| ||||||||    
T  9865544 aaaatgaaaaaag-aggatcgtgtcacgattattgaaaaacgtgacacgattt 9865493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 9257384 - 9257455
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    ||||||||| | ||| || ||||||||||| ||||||||||||| ||||||||||| || ||| ||||||||    
T  9257384 catttagcacattttccatttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatc 9257455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 9312869 - 9312798
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    ||||||||| | ||| || ||||||||||| ||||||||||||| ||||||||||| || ||| ||||||||    
T  9312869 catttagcacattttccatttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatc 9312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 11231071 - 11231020
Alignment:
Q  148 taaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    |||||||| |||| |||||||||| | ||||||||| |||||||||||||||    
T  11231071 taaagacggttaatcattttcacctaattaatcaattcatcatgtgcatatc 11231020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 9080422 - 9080467
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||||| ||||||  ||| |||||||||    
T  9080422 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 9080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 350
Target Start/End: Complemental strand, 9274000 - 9273885
Alignment:
Q  235 ttttcatgatattttg-agttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttga 333  Q
    |||| ||||||||||| ||||||||||||||||||| || |||  |||  ||||||| | |||||   |||||||||   |||| ||||||||||  |||    
T  9274000 tttttatgatattttggagttcacaagcaagcttaagcaccaagaaaagaaagaaaagttgaagaaactgaagaaag-ggaatcatgtcacgattactga 9273902  T
Q  334 aaaagtgtcacgatttg 350  Q
    ||| |||||||||||||    
T  9273901 aaacgtgtcacgatttg 9273885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 16202999 - 16202955
Alignment:
Q  128 catttagcataatttgcaattaaagacgattaagcattttcacca 172  Q
    ||||||||| |||||| | ||||||||||||||| ||||||||||    
T  16202999 catttagcacaatttggatttaaagacgattaagaattttcacca 16202955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 23389149 - 23388995
Alignment:
Q  204 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga-tttt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  23389149 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacagcaaagaaaacaagaaaaatagaagattttt 23389050  T
Q  303 gaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  23389049 gaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 23388995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 23379810 - 23379656
Alignment:
Q  204 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga-tttt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||    
T  23379810 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttt 23379711  T
Q  303 gaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  23379710 gaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 23379656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 5739190 - 5739034
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcatttt-catgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    |||||||||||||||||||||| ||||||| ||  |||| |||||||| |||||||||||||||||  ||| ||||||||||| ||||||||||||||||    
T  5739190 tgatgacagtcagtcattcactatttttagagttttttttcatgatatgttgagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaaga 5739091  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||| ||||    
T  5739090 ttttgaagaaagcaaaatcgtgtcacgattgttaaaaacatgtcacgatttggagca 5739034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 200 - 355
Target Start/End: Original strand, 34501416 - 34501569
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||| |||||||  |  ||||| ||||||||||||||| ||  ||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  34501416 tgatgacagtccgtcattcgttaattttaatgtcattttcatgatgtt--gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagat 34501513  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  34501514 tttgatgaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagca 34501569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 9953035 - 9953193
Alignment:
Q  199 ctgatgacagtcagtcatt-cactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaa 296  Q
    |||||||||||| |||||| |||  ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||||||    
T  9953035 ctgatgacagtctgtcatttcaca-tttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaa 9953132  T
Q  297 gattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  9953133 gattttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcaca 9953193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 2371414 - 2371549
Alignment:
Q  201 gatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagatt 300  Q
    ||||| ||| ||| ||||||| |||||| |||  |||| ||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||    
T  2371414 gatgatagttagttattcactatttttaatgttttttttatgatattttgagttcataagcaagtttaaacagcaaataaaacaagaaaaatagaagatt 2371513  T
Q  301 ttgaagaaagcaaaatcgtgtcacgattgttgaaaa 336  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2371514 ttgaagaaagcaaaatcgtatcacgattgttgaaaa 2371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 31071494 - 31071603
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | |||||||||||||||||||||| |||||||||||| ||||||||||| || ||| |||| || |||||||| |||||    
T  31071494 tgatgacagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacgagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 31071593  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  31071594 tttgaagaaa 31071603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 13004433 - 13004509
Alignment:
Q  234 attttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  13004433 atttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaa 13004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 6512433 - 6512503
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaaga 307  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||||| ||||| | ||||||||||||||    
T  6512433 ttcatgatcttttgagttcacaagcaagcttaaacagcaaggaaaacatgaaaagttgaagattttgaaga 6512503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28666177 - 28666100
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||||  | ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||    
T  28666177 ctgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaa 28666100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 28112709 - 28112641
Alignment:
Q  241 tgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    |||| ||||||||||||||||||||||||  ||||| |||| || ||||| | ||||||||||||||||    
T  28112709 tgatcttttgagttcacaagcaagcttaaaaagcaaggaaagcatgaaaagttgaagattttgaagaaa 28112641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 10289185 - 10289277
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||| |||||||| || ||||||| ||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| |||||||||    
T  10289185 ctgatgacagtaagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaaa 10289277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 12991617 - 12991556
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    |||||||||||| |||||||||||||||||||| || |||  ||| |||||||||| |||||    
T  12991617 ttcatgatatttggagttcacaagcaagcttaatcaacaagaaaagcaagaaaaattgaaga 12991556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 14282445 - 14282373
Alignment:
Q  238 tcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaag 310  Q
    ||||||| ||||||||| || |||||||| || |||||| ||||||| ||||| | ||| |||||||||||||    
T  14282445 tcatgatcttttgagtttacgagcaagctaaaacagcaaggaaaacatgaaaagttgaaaattttgaagaaag 14282373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 13004643 - 13004611
Alignment:
Q  317 cgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    |||||||||||||||||||| ||||||||||||    
T  13004643 cgtgtcacgattgttgaaaacgtgtcacgattt 13004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 13022244 - 13022212
Alignment:
Q  237 ttcatgatattttgagttcacaagcaagcttaa 269  Q
    |||||||||||| ||||||||||||||||||||    
T  13022244 ttcatgatatttggagttcacaagcaagcttaa 13022212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 61597 - 61754
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||    
T  61597 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaagat 61696  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  61697 tttaaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttgaaacaca 61754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 49499568 - 49499413
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  49499568 tgatgacagtcagtcattcgctgtttttagtgttattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagat 49499469  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  49499468 tttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagca 49499413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 2793299 - 2793456
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||||||| |||||| ||||||| ||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  2793299 tgatgacagtcagtcgttcactatttttagagtctttttaatgatattttgagttcacaagcaagtttaaacagtaaagaaaacaagaaaaatagaagat 2793398  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2793399 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcaca 2793456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 1951345 - 1951190
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1951345 tgatgacagtcagtcattcactattttaagtatcattttcatgatatcttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 1951246  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagca 355  Q
    ||  ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  1951245 ttcaaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagca 1951190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 29644262 - 29644151
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    |||||||||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||    
T  29644262 ttttgagttcacaagcaaacttaagcagcaaaaaaagcaagaaaaatagaagactttgaagaaagtaaaatcgtgtcacgattgttgaaaacgtatcacg 29644163  T
Q  346 atttgaagcaca 357  Q
    ||||| ||||||    
T  29644162 atttggagcaca 29644151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 31204013 - 31204123
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||| ||||||||||||  | ||||||||||||||||||| || |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  31204013 ctgatgatagtcagtcattctttatttttagtgtcattttcattatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 31204112  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  31204113 ttttgaagaaa 31204123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 34733223 - 34733106
Alignment:
Q  240 atgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagt 339  Q
    ||||| ||||||||||||||||||| |||| ||| || |||| || ||||| | ||||||||||||||||| ||||||||| |||||||||||||||  |    
T  34733223 atgatcttttgagttcacaagcaagattaaacagtaaggaaatcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacat 34733124  T
Q  340 gtcacgatttgaagcaca 357  Q
    |||| |||||| ||||||    
T  34733123 gtcaggatttggagcaca 34733106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 6071896 - 6071791
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||||| | |||     |||||||||||| | |||||||||||||||||||||||| || |||  |||||| |||||||| ||||    
T  6071896 ctgatgacagtcagtcattcattattt-----gtcattttcatgttgttttgagttcacaagcaagcttaaacaacaagaaaaacatgaaaaatacaaga 6071802  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  6071801 ttttgaagaaa 6071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 41059235 - 41059135
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    |||||||||||||||||||| || ||||||| ||| |||| |||||| |||||||||| ||||||||||||| ||||||  ||| |||||||||| ||||    
T  41059235 ctgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaatcgaag 41059136  T
Q  298 a 298  Q
    |    
T  41059135 a 41059135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 45961708 - 45961598
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    |||||||||||||||||||  || ||||||| ||| | || |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| |||    
T  45961708 ctgatgacagtcagtcatttgctatttttagagtcttgtt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaag 45961610  T
Q  298 attttgaagaaa 309  Q
    ||||||||||||    
T  45961609 attttgaagaaa 45961598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 309
Target Start/End: Complemental strand, 27537212 - 27537104
Alignment:
Q  201 gatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||  || ||||||  ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| |||||    
T  27537212 gatgacagtcagtcatttgctatttttatagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 27537114  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  27537113 tttgaagaaa 27537104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 2404722 - 2404798
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||| || ||||||| ||| |||| || ||| ||||||||||||||||||| |||| ||||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtc-tttttataatatttttgagttcacaagcaagattaagcagcaa 2404798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 21019367 - 21019292
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||| || ||||||| |||  ||| |||||| |||||||||| ||| ||||||||| ||||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcgcaaccaagcttaagcagcaa 21019292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 42021721 - 42021812
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattt-tgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||| |||||| || ||||||| ||| |||| || |||||  |||||||||||||||| |||| ||||||  ||| |||||||||    
T  42021721 tgatgacagtcaatcattcgctatttttagagtcttttt-ataatattactgagttcacaagcaagtttaagcagcaataaaagcaagaaaaa 42021812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 26358672 - 26358829
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  26358672 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaaggaagtttaaacagcaaagaagacaagaaaaatagaagat 26358771  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    || |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  26358772 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcaca 26358829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 36809435 - 36809278
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  36809435 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 36809336  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||| ||||||||| | ||||||||||||||||||| ||||||||||||| ||||||    
T  36809335 tttgaggaaagcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 36809278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 38006286 - 38006129
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||||||||||    
T  38006286 tgattacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaaacaagcttaaacaacaaagaaagcaagagaaatagaagat 38006187  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||    
T  38006186 tttgaagaaagcaaaatcgtgtgacgattgtcgaaaacgtgtcacgatttggagcaca 38006129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 25821922 - 25821767
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatat----tttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaataga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  25821922 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaataga 25821823  T
Q  296 aga-ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttg 350  Q
    ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  25821822 agatttttgaagaaagcaaaatcgtgtcaagattgttgaaaaggtgtcacgatttg 25821767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 25869835 - 25869992
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| |||| || |||||||||||||| |||||||||||    
T  25869835 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagaaagtttaaacaacaaagaaaacaagagaaatagaagat 25869934  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  25869935 tttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 25869992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 25873203 - 25873360
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagagaaatagaagat 25873302  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  25873303 tttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcatgatttggagcaca 25873360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 30275691 - 30275541
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||| |||| || ||||||||||||||||||||||||||    
T  30275691 tgatgatagtcagtcattcaatatttttagtgtcattttcatgatattttgaattcacaaacaagtttaaacaacaaagaaaacaagaaaaatagaagat 30275592  T
Q  300 tttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttg 350  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  30275591 tttgaggaaagcaaattcgtgtcacgattgttgaaaacgtgtcacgatttg 30275541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 15466170 - 15466298
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||    
T  15466170 tgatgacaatcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaagat 15466269  T
Q  300 tttgaagaaagcaaaatcgtgtcacgatt 328  Q
    |||||||||||||||||||||||||||||    
T  15466270 tttgaagaaagcaaaatcgtgtcacgatt 15466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 25139994 - 25139883
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacg 345  Q
    ||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||    
T  25139994 ttttgagttcacaagtaagcttaaacggcaaagaaagcaagaaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgacaacgtgtcacg 25139895  T
Q  346 atttgaagcaca 357  Q
    ||||| ||||||    
T  25139894 atttggagcaca 25139883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 29439597 - 29439723
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    ||||||||||| |||||||  |  ||||||||||||||||||||| ||  ||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  29439597 tgatgacagtccgtcattcgttaattttagtgtcattttcatgatgtt--gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagat 29439694  T
Q  300 tttgaagaaagcaaaatcgtgtcacgatt 328  Q
    || ||||||||||||||||||||||||||    
T  29439695 ttcgaagaaagcaaaatcgtgtcacgatt 29439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 16788389 - 16788537
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||  || |||||||  || |||  |||||| |||||||||||||||||||||||| || |||  ||| ||||||||||| ||||    
T  16788389 tgatgacagtcagtcatttgctatttttagaatctttt--atgataattttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataaga 16788486  T
Q  299 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgattt 349  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  16788487 ttttgatgaaagcacaatcgtgtcacgattgttgaaaacgtgtcacgattt 16788537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 36985732 - 36985626
Alignment:
Q  203 tgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagatttt 302  Q
    ||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||  ||||||||||||||||    
T  36985732 tgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcagaaaaaatagaagatttt 36985633  T
Q  303 gaagaaa 309  Q
    |||||||    
T  36985632 gaagaaa 36985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 45456300 - 45456409
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||| |||| |||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| || |||||||| |||||    
T  45456300 tgatgacaatcagccattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaagaaagcatgaaaaatacaagat 45456399  T
Q  300 tttgaagaaa 309  Q
    ||||||||||    
T  45456400 tttgaagaaa 45456409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 45453050 - 45453160
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||| ||||||||||  | ||||||| |||||||||||||| |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  45453050 ctgatgacaatcagtcattctttatttttagggtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 45453149  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  45453150 ttttgaagaaa 45453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 38014636 - 38014745
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||||||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| ||||    
T  38014636 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 38014734  T
Q  299 ttttgaagaaa 309  Q
    |||||||||||    
T  38014735 ttttgaagaaa 38014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 10599951 - 10600042
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| |||||||  || |||| |||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  10599951 tgatgacagtcagtcattcactatttttagaatcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 10600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 31430639 - 31430529
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaag 297  Q
    ||||||||||| |||||||  || ||||||| ||| |||| |||||| |||||||||||||||||||||||| || ||| |||| || |||||||| |||    
T  31430639 ctgatgacagttagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaag 31430541  T
Q  298 attttgaagaaa 309  Q
    ||||||||||||    
T  31430540 attttgaagaaa 31430529  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 5665830 - 5665905
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagca 275  Q
    |||||||||||| |||||| || ||||||| ||| |||| |||||||||| |||||||||||||||||||| |||||    
T  5665830 tgatgacagtcaatcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagca 5665905  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 9961189 - 9961241
Alignment:
Q  147 ttaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||    
T  9961189 ttaaagacgattaagcattttaaccaagttaataaatacctcatatgcatatc 9961241  T

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Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 31428404 - 31428340
Alignment:
Q  245 attttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaa 309  Q
    |||||||||||||||||||| |||| || ||| |||| || |||||||| |||||||||||||||    
T  31428404 attttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31428340  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 3874482 - 3874573
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||| | ||||||| ||| |||| | |||| |||||||||||||| |||| |||| ||||||  ||| |||||||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtc-tttttaggatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 3874573  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 5104952 - 5105027
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaa 276  Q
    ||||||||||||||||||||||  ||||||| ||  |||| |||||| ||||||||||||||||||| |||| ||||||    
T  5104952 ctgatgacagtcagtcattcac--tttttagagt-ttttttatgatatttttgagttcacaagcaagattaagcagcaa 5105027  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 13136764 - 13136853
Alignment:
Q  202 atgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||||||||   | ||||||| |||||||| |||||||||| |||||||||| |||| |||| ||||||  ||| |||||||||    
T  13136764 atgacagtcagtcatttgttatttttagagtcatttt-atgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 13136853  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 43722904 - 43722980
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaa 276  Q
    |||||||||||| ||||||  | ||||||| ||| |||| |||||||||| ||||||||||||||| |||| ||||||    
T  43722904 tgatgacagtcaatcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcagcaa 43722980  T

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Target: scaffold0005 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 211 - 357
Target Start/End: Original strand, 290974 - 291120
Alignment:
Q  211 agtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaag 310  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||    
T  290974 agtcattcactatttttagtgtcattttcatgatattttaagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagattttgaggaaag 291073  T
Q  311 caaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    |||| | ||||||||||||||||||| ||||||||||||| ||||||    
T  291074 caaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 291120  T

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Target: scaffold0005; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 246304 - 246232
Alignment:
Q  246 ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcg 318  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  246304 ttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcaaaatcg 246232  T

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Target: scaffold0334 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 199 - 324
Target Start/End: Original strand, 18462 - 18588
Alignment:
Q  199 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  18462 ctgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaaga 18561  T
Q  299 -ttttgaagaaagcaaaatcgtgtcac 324  Q
     ||||||||||||||||| ||||||||    
T  18562 tttttgaagaaagcaaaaacgtgtcac 18588  T

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Target: scaffold0045 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 88965 - 89071
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| || ||||||||||||||    
T  88965 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagat 89064  T
Q  300 tttgaag 306  Q
    |||||||    
T  89065 tttgaag 89071  T

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Target: scaffold0080 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 26331 - 26402
Alignment:
Q  286 gaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaaagtgtcacgatttgaagcaca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26331 gaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcaca 26402  T

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Target: scaffold1684 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 474 - 369
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaagat 299  Q
    |||||| ||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||  || |||||||| |||||    
T  474 tgatgaaagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaacgcatgaaaaatacaagat 375  T
Q  300 tttgaa 305  Q
    ||||||    
T  374 tttgaa 369  T

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Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 367451 - 367389
Alignment:
Q  127 acatttagcataatttgcaattaaagacgattaagcattttcaccaagttaatcaatacatca 189  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  367451 acatttatcataatttgcaattaaagacgattaagcattttcaccaagttaatcaattcatca 367389  T

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Target: scaffold0015 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 197242 - 197358
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaatagaaga 298  Q
    ||||||||||| |||||||    ||||||| ||| |||| |||||||||| |||||||||||||||| ||| ||||||  ||| ||||||||||||||||    
T  197242 tgatgacagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagcataagcagcaagaaaagcaagaaaaatagaaga 197340  T
Q  299 ttttgaagaaagcaaaat 316  Q
    |||||||||||| |||||    
T  197341 ttttgaagaaagtaaaat 197358  T

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Target: scaffold0757 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 4563 - 4654
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    |||||||||||||||||||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaatcaagaaaaa 4654  T

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Target: scaffold0381 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 6554 - 6462
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||||||||||| || ||||||| ||| |||| |||||| ||||||||||||| |||||||||| || |||  ||| |||||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 6462  T

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Target: scaffold0270 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 1060 - 969
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||||||||||||||||| ||  |||||| || ||||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  1060 tgatgacagtcagtcattcgctacttttagagt-atttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 4420 - 4329
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||| ||||||||||||| ||  |||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  4420 tgatgtcagtcagtcattcgctacttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 11550 - 11459
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaaa 291  Q
    ||||| ||||||||||||| ||  |||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| |||||||||    
T  11550 tgatgtcagtcagtcattcgctacttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 11459  T

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Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 8785 - 8837
Alignment:
Q  147 ttaaagacgattaagcattttcaccaagttaatcaatacatcatgtgcatatc 199  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  8785 ttaaagacgattaagcattttcaccaagttaattggtacatcatgtgcatatc 8837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 4880 - 4790
Alignment:
Q  200 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaccagcaaagaaaacaagaaaa 290  Q
    |||||||||||||||||||  | ||||||| ||| |||| |||||||||| |||||||||| |||| |||| ||||||| |||  |||||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaaacaagattaagcagcaaaaaaagaaagaaaa 4790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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