View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_low_1 (Length: 473)
Name: NF17003_low_1
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 27297484 - 27297026
Alignment:
| Q |
1 |
cttatgattaaattgtataatttcttatggtagaaattggtattgtaattgaagtggcttaacttgttttcgattttttgttgaaatgaaaatgcaggca |
100 |
Q |
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| T |
27297484 |
cttatgattaacttgtataatttcttatggtagaaattggtattgtaattgaagtagcttaacttgttttccatttttggttgaaatgaaaatgcaggca |
27297385 |
T |
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| Q |
101 |
tttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattccagcagattacaccttctatgtggggcccattgttttttcgggcc |
200 |
Q |
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| T |
27297384 |
tttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattccagcagattacaccttctatgtggggcccattgttttttcgggcc |
27297285 |
T |
|
| Q |
201 |
catactgtaaacccagaatcattttccaggtaacannnnnnnnacatgagagaagggtgcagctattaacacctccatgtttactactacaccaaggtgt |
300 |
Q |
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| T |
27297284 |
catactgtaaacccagaatcattttccaggtaacattttttttacatgagagaagggtgcagctattaacaccaccatatttactactacaccaaggtgt |
27297185 |
T |
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| Q |
301 |
tcgaagtcatattttggatgtgtattttttcaggtagatggaaccattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttgg |
400 |
Q |
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| T |
27297184 |
tcgaagtcatattttggatgtgtattttttcaggtagatggaaccattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttgg |
27297085 |
T |
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| Q |
401 |
actttacaaaactggttggatttactattcagggaaatggcattattgatggaagaggt |
459 |
Q |
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| T |
27297084 |
actttacaaaactggttggatttactattcaaggaaatggcatttttgatggaagaggt |
27297026 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 14736561 - 14736650
Alignment:
| Q |
91 |
aatgcaggcatttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattccagcagattacaccttctatgtggg |
180 |
Q |
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|||||||||||| |||| ||||||| || ||||||||||||| || ||||| ||| | ||||||||| |||||| |||||| ||||| |
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| T |
14736561 |
aatgcaggcattccaagcaacatgggcagctacatgtaaagtagaagcatcaacaatggtgattccagcaaattacatcttctacgtggg |
14736650 |
T |
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