View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_low_2 (Length: 296)
Name: NF17003_low_2
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 25715363 - 25715094
Alignment:
| Q |
14 |
ttctgtcatatctctatcaatatttcacgaaattttcttcaccgtgaatcccagattactttcattttctcatctccacttgacataatttcaactcata |
113 |
Q |
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| T |
25715363 |
ttctgtcatatctctatcaatatttcacgaaattttcttcaccgtgaatcccacattactttcattttctcatctccacttgacataatttcaactcata |
25715264 |
T |
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| Q |
114 |
atttggattgcaaccgcaattagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccacta- |
212 |
Q |
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| T |
25715263 |
atttggattgcaaccgcaattagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccactat |
25715164 |
T |
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| Q |
213 |
---tgtagttttgtaaagaaccataacggaaccagctaacacagtgacacgtattctaacacttgtcata |
279 |
Q |
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| T |
25715163 |
gtatgtagttttgtaaagaaccataacggaaccagctaatacagtgacacgtattctaacacctgtcata |
25715094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 40389846 - 40389780
Alignment:
| Q |
133 |
ttagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatc |
201 |
Q |
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| T |
40389846 |
ttagcagcccttattatatcaagtatat--tgatggctctaatgatctcaattattggcttaatcaatc |
40389780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 43529231 - 43529134
Alignment:
| Q |
146 |
ttatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccactatgtagttttgtaaagaaccataacggaaccagc |
245 |
Q |
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| T |
43529231 |
ttatatcaagtatat--tgatggctctactgatatcaattattggtttaatcattc-atctg-attatgtagttttatacagaaccataacggaaccagc |
43529136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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