View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_high_1 (Length: 811)

Name: NF17004_high_1
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_high_1
NF17004_high_1
[»] chr6 (7 HSPs)
chr6 (208-508)||(9425623-9425923)
chr6 (20-225)||(9425944-9426149)
chr6 (506-708)||(9425232-9425434)
chr6 (708-795)||(9425048-9425135)
chr6 (34-100)||(9432578-9432644)
chr6 (423-481)||(6658034-6658092)
chr6 (423-477)||(19780392-19780446)
[»] chr1 (5 HSPs)
chr1 (421-484)||(27442303-27442366)
chr1 (423-481)||(32715849-32715907)
chr1 (421-481)||(45691532-45691592)
chr1 (423-469)||(17971084-17971130)
chr1 (426-475)||(28723900-28723949)
[»] chr4 (1 HSPs)
chr4 (421-481)||(25376775-25376835)
[»] chr2 (5 HSPs)
chr2 (421-481)||(32872498-32872558)
chr2 (423-477)||(14200299-14200354)
chr2 (420-478)||(45723847-45723905)
chr2 (423-476)||(34309374-34309427)
chr2 (445-508)||(7011222-7011285)
[»] chr7 (3 HSPs)
chr7 (433-484)||(10409849-10409900)
chr7 (423-484)||(10599682-10599744)
chr7 (423-477)||(14568518-14568572)
[»] chr3 (5 HSPs)
chr3 (423-481)||(30041239-30041297)
chr3 (422-484)||(35104823-35104884)
chr3 (426-484)||(24650275-24650336)
chr3 (426-472)||(41560136-41560182)
chr3 (427-476)||(49983872-49983921)
[»] chr8 (2 HSPs)
chr8 (426-476)||(5923984-5924034)
chr8 (423-481)||(38209452-38209510)
[»] chr5 (1 HSPs)
chr5 (430-476)||(17686605-17686651)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 208 - 508
Target Start/End: Complemental strand, 9425923 - 9425623
Alignment:
Q  208 agaaattttacaagcttcaaaacctttaaaatttgagaagtatatattaatgctaattgattttattttttaacatatttatttggtaataaaattaaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9425923 agaaattttacaagcttcaaaacctttaaaatttgagaagtatatattaatgctaattgattttattttttaacatatttatttggtaataaaattaaga 9425824  T
Q  308 atatggatatgattcatgtaaacaaagcgggatcttaattgaatgaattctaacaatatttcttttaaaacttataattgagattttatgtttatgtaaa 407  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9425823 atatggatatgattcatgtaaacaaagccggatcttaattgaatgaattctaacaatatttcttttaaaacttataattgagattttatgtttatgtaaa 9425724  T
Q  408 tactccctccgatgatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttgcaannnnnnngaatgtttttacaaat 507  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  9425723 tactccctccaatgattctttttataagaagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaat 9425624  T
Q  508 a 508  Q
    |    
T  9425623 a 9425623  T

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Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 9426149 - 9425944
Alignment:
Q  20 ataaacaacatcataaaatgaatggtgaaggtgacatttgtgttaaaaattttagtatcatgctctttggtaagaagattcagcccaactcttcaaccat 119  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9426149 ataaacaacatcacaaaatgaatggtgaaggtgacatctgtgttaaaaattttagtatcatgctctttggtaagaagattcagcccaactcttcaaccat 9426050  T
Q  120 ggtaagtactcatatttatatcacactcaataaccatttttcatgttaatttagaaagttatgattttagttagtttgttatgttgttagaaattttaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  9426049 ggtaagtactcatatttatatcacactcaataaccatttttcatgttaatttagaaagttatgattttagtttgtttgtcatgttattagaaattttaca 9425950  T
Q  220 agcttc 225  Q
    ||||||    
T  9425949 agcttc 9425944  T

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Target: chr6; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 506 - 708
Target Start/End: Complemental strand, 9425434 - 9425232
Alignment:
Q  506 ataaatgaatttaataaattgagaccaaggtttgtgaagcttcataccaaagggttatctttgtttcttctgatatcaaattggatttattgcatttttt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9425434 ataaatgaatttaataaattgagaccaaggtttgtgaagcttcataccaaagggt-atctttgtttcttctgatatcaaattggatttattgcatttttt 9425336  T
Q  606 -atactaatctatttttgtgaaattgggttgtacttcttacagaaatttaacatgaaaatttttgattggagtattctattaaatcataaaattgctagg 704  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9425335 tatactaatctatttttgtgaaattgggttgtacttcttaaagaaatttaacatgaaattttttgattggagtattctattaaatcataaaattgctagg 9425236  T
Q  705 tgct 708  Q
    ||||    
T  9425235 tgct 9425232  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 708 - 795
Target Start/End: Complemental strand, 9425135 - 9425048
Alignment:
Q  708 tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggtcagtgatgataagtgacacggacactgtaat 795  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||    
T  9425135 tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggttggtgatgataagtgacaccgacattgtaat 9425048  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 9432644 - 9432578
Alignment:
Q  34 aaaatgaatggtgaaggtgacatttgtgttaaaaattttagtatcatgctctttggtaagaagattc 100  Q
    ||||||||||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||||||||    
T  9432644 aaaatgaatggtgaaggtgacatgtttgttaaagattctagtttcatgctctttggtaagaagattc 9432578  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 6658092 - 6658034
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    ||||||||||||||| |||||| ||||||||||||||||  || |||||||||| ||||    
T  6658092 tcctttttataagaaaagaaaccaaaaatcatcaaaaccttgacaatcattagtggttg 6658034  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 19780446 - 19780392
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagtt 477  Q
    |||||| |||||||| |||||  | |||||||||||||||||| |||||||||||    
T  19780446 tcctttatataagaaaagaaatcataaatcatcaaaaccaagataatcattagtt 19780392  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 27442303 - 27442366
Alignment:
Q  421 gatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttgcaa 484  Q
    |||||||| |||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||    
T  27442303 gatcctttatataagaaaagaaaccaaaaattatcaaaaccaagacaatcattagttgttgcaa 27442366  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 32715907 - 32715849
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    |||||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  32715907 tcctttatataagaaaagaaaccaaaaatcatcaaaaccaagacaatcattagttgttg 32715849  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 45691532 - 45691592
Alignment:
Q  421 gatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||    
T  45691532 gatcttttttataagaagagaaatcaaaaatcatcaaaaccaagacaattattagttgttg 45691592  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 17971084 - 17971130
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaat 469  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||    
T  17971084 tcctttatataagaaaagaaaccaaaaatcatcaaaaccaagaaaat 17971130  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 475
Target Start/End: Original strand, 28723900 - 28723949
Alignment:
Q  426 tttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattag 475  Q
    |||||||||||| |||||  ||||||||||| |||||||| |||||||||    
T  28723900 tttttataagaaaagaaatcaaaaatcatcataaccaagacaatcattag 28723949  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 25376775 - 25376835
Alignment:
Q  421 gatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    |||||||  |||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  25376775 gatccttcgtataagaaaagaagcaaaaaatcatcaaaaccaagacaatcattagttgttg 25376835  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 32872558 - 32872498
Alignment:
Q  421 gatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||| |||||||||| ||||    
T  32872558 gatcctttttataagaaaagaaaccaaagatcatcaaaaccaagacaatcattagtggttg 32872498  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 14200299 - 14200354
Alignment:
Q  423 tcctttttataagaagagaaacaaaa-aatcatcaaaaccaagaaaatcattagtt 477  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  14200299 tcctttttataagaagagaaataaaaaaatcatcaaaaccaagacaatcattagtt 14200354  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 45723847 - 45723905
Alignment:
Q  420 tgatcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttg 478  Q
    ||||||||| |||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  45723847 tgatcctttatataagaaaagaaaccaaaaatcatcaaaaccaaaacaatcattagttg 45723905  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 34309427 - 34309374
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagt 476  Q
    ||||||||||||||| | |||| |||||||||||||| ||||| ||||||||||    
T  34309427 tcctttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcattagt 34309374  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 508
Target Start/End: Complemental strand, 7011285 - 7011222
Alignment:
Q  445 aaaaaatcatcaaaaccaagaaaatcattagttgttgcaannnnnnngaatgtttttacaaata 508  Q
    ||||||||||||||| ||||| ||||| ||||||||||||       |||||||||||||||||    
T  7011285 aaaaaatcatcaaaatcaagacaatcagtagttgttgcaatttttttgaatgtttttacaaata 7011222  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 10409900 - 10409849
Alignment:
Q  433 aagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttgcaa 484  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  10409900 aagaaaagaaacaaaaaatcatcaaaaccaaaacaatcattagttgttgcaa 10409849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 10599682 - 10599744
Alignment:
Q  423 tcctttttataagaagagaaacaaaa-aatcatcaaaaccaagaaaatcattagttgttgcaa 484  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| | | ||||||||||||||    
T  10599682 tcctttttataagaagaaaaacaaaaaaatcatcaaaaccaagacattgattagttgttgcaa 10599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 14568572 - 14568518
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagtt 477  Q
    |||||| |||||||| |||||  | |||||||||||||||||| |||||||||||    
T  14568572 tcctttatataagaaaagaaatcataaatcatcaaaaccaagacaatcattagtt 14568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 30041239 - 30041297
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    ||||||||||||||| | ||| ||||||||||||||||||||| |||||||||| ||||    
T  30041239 tcctttttataagaaaaaaaataaaaaatcatcaaaaccaagacaatcattagtggttg 30041297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 35104884 - 35104823
Alignment:
Q  422 atcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttgcaa 484  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  35104884 atcctttatataagaaaagaaacaaaaaatcatc-aaaccaagacaattattagttgttgcaa 35104823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 24650336 - 24650275
Alignment:
Q  426 tttttataagaagagaaacaaaaaatcatcaaaaccaagaaaa---tcattagttgttgcaa 484  Q
    ||||| ||| |||||||||||||||| ||||||||||||| ||   ||||||||||||||||    
T  24650336 tttttgtaaaaagagaaacaaaaaattatcaaaaccaagacaatattcattagttgttgcaa 24650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 41560182 - 41560136
Alignment:
Q  426 tttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcat 472  Q
    |||||||||||| |||||| ||||||||| |||||||||| ||||||    
T  41560182 tttttataagaaaagaaaccaaaaatcatgaaaaccaagataatcat 41560136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 49983921 - 49983872
Alignment:
Q  427 ttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagt 476  Q
    ||||||||||| |||||  ||||||||| |||||||||| ||||||||||    
T  49983921 ttttataagaaaagaaatcaaaaatcattaaaaccaagacaatcattagt 49983872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 5924034 - 5923984
Alignment:
Q  426 tttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagt 476  Q
    |||||||||||| | |||  |||||||||||||||||||| ||||||||||    
T  5924034 tttttataagaaaataaatcaaaaatcatcaaaaccaagataatcattagt 5923984  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 38209452 - 38209510
Alignment:
Q  423 tcctttttataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagttgttg 481  Q
    |||||| |||||||| | |||  |||||||||||||||||||| |||||||| ||||||    
T  38209452 tcctttatataagaaaaaaaatcaaaaatcatcaaaaccaagataatcattacttgttg 38209510  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 17686651 - 17686605
Alignment:
Q  430 tataagaagagaaacaaaaaatcatcaaaaccaagaaaatcattagt 476  Q
    |||||||||| |||| ||||| |||||||||||| ||||||||||||    
T  17686651 tataagaagaaaaaccaaaaaccatcaaaaccaataaaatcattagt 17686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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