View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_11 (Length: 364)
Name: NF17004_high_11
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 362
Target Start/End: Original strand, 33345710 - 33346066
Alignment:
| Q |
6 |
agtgagatgaacgactccatttgttgccatgattttcggtccaccaagttgcatgtgagagctgtacacctccctaccaagaagtttgtttaatgctgaa |
105 |
Q |
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| T |
33345710 |
agtgagatgaacgactccatttgttgccatgattttcggtccaccaagttgcatgtgagagctgtacacctccctaccaagaagtttgtttaatgctgaa |
33345809 |
T |
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| Q |
106 |
aacccggtaagaattataggctgatcaagcctctgtatgcacctcatcccaagcctagcaagataagcaccaattccaacagtcctaccagtaacatatg |
205 |
Q |
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| T |
33345810 |
aacccggtaagaattataggctgatcaagcctctgtatgcacctcatcccaagcctagcaagataagcaccaattccaacagtcctaccggtaacatatg |
33345909 |
T |
|
| Q |
206 |
tcaatgtaaaggtttccttgtatgcccttgaataggcaccagcaatggccccactaccactcaagttttcaactcccagtccatcttctttgccaacaat |
305 |
Q |
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| T |
33345910 |
tcaatgtaaaggtttccttgtatgcccttgaataggcaccagcaatggccccactaccactcaagttttcaactcccagtccatcttctttgccaacaat |
33346009 |
T |
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| Q |
306 |
ggtatctataacccatctggtttctccactttcaagttttaattcatgtgccatcac |
362 |
Q |
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| T |
33346010 |
ggtatctataacccatctggtttctccactttcaagttttaattcatgtgccatcac |
33346066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 33320592 - 33320944
Alignment:
| Q |
10 |
agatgaacgactccatttgttgccatgattttcggtccaccaagttgcatgtgagagctgtacacctccctaccaagaagtttgtttaatgctgaaaacc |
109 |
Q |
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|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |
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| T |
33320592 |
agatgaacaactccatttgttgccatgattttagatccaccaagttgcatgtgagagctgtacacttccctaccaaggagtttgtttaatgctgaaaaac |
33320691 |
T |
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| Q |
110 |
cggtaagaattataggctgatcaagcctctgtatgcacctcatcccaagcctagcaagataagcaccaattccaacagtcctaccagtaacatatgtcaa |
209 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||| || |||||||| | |
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| T |
33320692 |
cggtaagaatcataggctgatcaaacctctgtatgcatctcatccccagccttgcaagataagcaccaattccaacagttgtaccggtcacatatgttag |
33320791 |
T |
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| Q |
210 |
tgtaaaggtttccttgtatgcccttgaataggcaccagcaatggccccactaccactcaagttttcaactcccagtccatcttctttgccaacaatggta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | |||||||| | ||||||| |
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| T |
33320792 |
tgtaaaggtttccttgtatgcccttgaataggcaccggcaatggccccactgccactcaagttttcaactcctagtccaacgtctttgccgagaatggta |
33320891 |
T |
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| Q |
310 |
tctataacccatctggtttctccactttcaagttttaattcatgtgccatcac |
362 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33320892 |
tctataacccatctggtttctccactttcaatctttaattcatgtgccatcac |
33320944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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