View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_15 (Length: 353)
Name: NF17004_high_15
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_15 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 9728 - 10068
Alignment:
| Q |
2 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccc |
9827 |
T |
|
| Q |
102 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttc |
9927 |
T |
|
| Q |
202 |
tgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaa |
301 |
Q |
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| T |
9928 |
tgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaaa |
10026 |
T |
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| Q |
302 |
attattcttattttaattaggtttaagtctgacgagaataat |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10027 |
attattcttattttaattaggtttaagtctgacgagaataat |
10068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 18180723 - 18181063
Alignment:
| Q |
2 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180723 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccc |
18180822 |
T |
|
| Q |
102 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180823 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttc |
18180922 |
T |
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| Q |
202 |
tgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaa |
301 |
Q |
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|||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18180923 |
tgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaaa |
18181021 |
T |
|
| Q |
302 |
attattcttattttaattaggtttaagtctgacgagaataat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
18181022 |
attattcttattttaattaggtttaagtctgacgagaataat |
18181063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 37189381 - 37189616
Alignment:
| Q |
2 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37189381 |
ttatgtaggagagatggccgagtggttgaaggtgcagtactggaactgctatgtaggctttttgtttaccgagggttcgaa---ctctctttccgcaccc |
37189477 |
T |
|
| Q |
102 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttc |
201 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189478 |
ttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattcctaatttatttctgttttc |
37189577 |
T |
|
| Q |
202 |
tgtaatnnnnnnnntagtggaataaagtgggcaaggaat |
240 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |
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| T |
37189578 |
tgtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 244818 - 244912
Alignment:
| Q |
2 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
96 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244818 |
ttatgtaggaaagatggccgagcggttcaaggcgtagcattggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
244912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 207817 - 207782
Alignment:
| Q |
68 |
taccgagggttcgaatccctctctttccgcaccctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
207817 |
taccgagggttcgaatccctctctttccgctccctt |
207782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 27029869 - 27029783
Alignment:
| Q |
2 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggc----tttttgtttaccgagggttcgaatc |
84 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
27029869 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaagctttttttttttttaccgagggttcgaatc |
27029783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 42818 - 42790
Alignment:
| Q |
68 |
taccgagggttcgaatccctctctttccg |
96 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
42818 |
taccgagggttcgaatccctctctttccg |
42790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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