View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_high_19 (Length: 347)

Name: NF17004_high_19
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_high_19
NF17004_high_19
[»] chr7 (1 HSPs)
chr7 (29-323)||(34335441-34335734)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 34335441 - 34335734
Alignment:
Q  29 agctatgatggagttaggggagggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335441 agctatgatggagttaggggagggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttg 34335540  T
Q  129 gaatttatctaccagacacaaatagagttagctgcatgtgagtaatttcattcttgaaatgttaggtatcacatgatacatgcaagttgtatcttaatcc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34335541 gaatttatctaccagacgcaaatagagttagctgcatgtgagtaattccattcttg-aatgttaggtatcacatgatacatgcaagttgtatcttaatcc 34335639  T
Q  229 gaatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacannnnnnnnaacttgaatttgagcaggtagtgatgat 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  34335640 gaatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacattttttttaacttgaatttgagcaggtagtgatgat 34335734  T

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