View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_21 (Length: 338)
Name: NF17004_high_21
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 5889064 - 5888739
Alignment:
| Q |
13 |
gctgttgctgcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
112 |
Q |
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| T |
5889064 |
gctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
5888965 |
T |
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| Q |
113 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaa |
212 |
Q |
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| T |
5888964 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaactaaaacaagaagaacaagaactagaaaa |
5888865 |
T |
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| Q |
213 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatggtaaagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatg |
312 |
Q |
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| T |
5888864 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagtaaagcttctgcgttgcttcttgatttgaaagctgagttaaatgcctatatg |
5888765 |
T |
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| Q |
313 |
gaatcaaagtcaaaccaagaaggaga |
338 |
Q |
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| T |
5888764 |
gaatcaaagtcaaaccaagaaggaga |
5888739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 46805827 - 46806140
Alignment:
| Q |
22 |
gcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacatatggaagcag |
121 |
Q |
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| T |
46805827 |
gcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaagagtcattagagactgctcatgctgcacacttggaagcag |
46805926 |
T |
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| Q |
122 |
aagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaaactcaatca |
221 |
Q |
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| T |
46805927 |
aggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatga |
46806026 |
T |
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| Q |
222 |
aaaaattttgtttgctatggatcttaaatctaaacatggta-aagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatggaatcaaa |
320 |
Q |
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| T |
46806027 |
gcaaatgttgtctgcaaaggatctcaaatctaaac-tggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaa |
46806125 |
T |
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| Q |
321 |
gtcaaaccaagaagg |
335 |
Q |
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| T |
46806126 |
gttaaagcaagaagg |
46806140 |
T |
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