View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_high_22 (Length: 336)

Name: NF17004_high_22
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_high_22
NF17004_high_22
[»] chr3 (8 HSPs)
chr3 (201-336)||(21966614-21966748)
chr3 (201-332)||(21966963-21967094)
chr3 (201-336)||(21989050-21989184)
chr3 (201-332)||(21989399-21989530)
chr3 (10-118)||(24047127-24047237)
chr3 (10-118)||(23674851-23674961)
chr3 (10-118)||(23679356-23679466)
chr3 (10-118)||(24051593-24051703)
[»] chr6 (2 HSPs)
chr6 (201-332)||(20487184-20487315)
chr6 (201-332)||(20481688-20481819)
[»] chr8 (3 HSPs)
chr8 (10-118)||(24859182-24859292)
chr8 (201-327)||(24858989-24859115)
chr8 (201-332)||(24860149-24860280)
[»] chr5 (2 HSPs)
chr5 (10-118)||(27205727-27205837)
chr5 (10-114)||(27210192-27210298)
[»] chr4 (2 HSPs)
chr4 (10-118)||(26897314-26897424)
chr4 (10-118)||(26901776-26901886)
[»] chr1 (2 HSPs)
chr1 (10-118)||(26406737-26406847)
chr1 (10-118)||(26411203-26411313)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 21966614 - 21966748
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21966614 ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt 21966712  T
Q  301 ctcacacatggtcgttgatgtggcgcttatggtcgc 336  Q
    |||||||||||||| |||||||||||||||||||||    
T  21966713 ctcacacatggtcgctgatgtggcgcttatggtcgc 21966748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 21967094 - 21966963
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  21967094 ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt 21966995  T
Q  301 ctcacacatggtcgttgatgtggcgcttatgg 332  Q
    |||||||||||||| |||||||||||||||||    
T  21966994 ctcacacatggtcgctgatgtggcgcttatgg 21966963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 21989050 - 21989184
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21989050 ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt 21989148  T
Q  301 ctcacacatggtcgttgatgtggcgcttatggtcgc 336  Q
    |||||||||||||| |||||||||||||||||||||    
T  21989149 ctcacacatggtcgctgatgtggcgcttatggtcgc 21989184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 21989530 - 21989399
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  21989530 ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt 21989431  T
Q  301 ctcacacatggtcgttgatgtggcgcttatgg 332  Q
    |||||||||||||| |||||||||||||||||    
T  21989430 ctcacacatggtcgctgatgtggcgcttatgg 21989399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 24047237 - 24047127
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  24047237 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24047138  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  24047137 acatactgctt 24047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 23674961 - 23674851
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  23674961 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23674862  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  23674861 acatactgctt 23674851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 23679466 - 23679356
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  23679466 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23679367  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  23679366 acatactgctt 23679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 24051703 - 24051593
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  24051703 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24051604  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  24051603 acatactgctt 24051593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 20487315 - 20487184
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  20487315 ttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgttaagt 20487216  T
Q  301 ctcacacatggtcgttgatgtggcgcttatgg 332  Q
    |||||||||||||| |||||||||||||||||    
T  20487215 ctcacacatggtcgctgatgtggcgcttatgg 20487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 201 - 332
Target Start/End: Original strand, 20481688 - 20481819
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||    
T  20481688 ttggtcccttatttaattttagtctcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgctaagt 20481787  T
Q  301 ctcacacatggtcgttgatgtggcgcttatgg 332  Q
    |||||||||||| | |||||||||||||||||    
T  20481788 ctcacacatggttgctgatgtggcgcttatgg 20481819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 24859292 - 24859182
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  24859292 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 24859193  T
Q  108 gcatactgctt 118  Q
    |||||||||||    
T  24859192 gcatactgctt 24859182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 24858989 - 24859115
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||| |||| ||| ||| ||| |||||||||||||||||    
T  24858989 ttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtccatcgtttttgttctttccgttaaaaatttattaagaaatgttaagt 24859088  T
Q  301 ctcacacatggtcgttgatgtggcgct 327  Q
    ||||||||||| || ||||||||||||    
T  24859089 ctcacacatgggcgctgatgtggcgct 24859115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 24860280 - 24860149
Alignment:
Q  201 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 300  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||| | ||||||||||||||| ||||| |||||||  ||||||  |||| |||||||    
T  24860280 ttggtcccttaattatttttagactcattttggtcctttaattaagctccgtccatcgtttatgccctttccgtcaaattttaattttgaaacgttaagt 24860181  T
Q  301 ctcacacatggtcgttgatgtggcgcttatgg 332  Q
    |||||| ||||||| |||||||||||||||||    
T  24860180 ctcacatatggtcgctgatgtggcgcttatgg 24860149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 27205727 - 27205837
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  27205727 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27205826  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  27205827 acatactgctt 27205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 27210192 - 27210298
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  27210192 attatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27210291  T
Q  108 gcatact 114  Q
     ||||||    
T  27210292 acatact 27210298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 26897314 - 26897424
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  26897314 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26897413  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  26897414 acatactgctt 26897424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 26901776 - 26901886
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  26901776 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26901875  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  26901876 acatactgctt 26901886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 26406847 - 26406737
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  26406847 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26406748  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  26406747 acatactgctt 26406737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 26411313 - 26411203
Alignment:
Q  10 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc 107  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  26411313 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26411214  T
Q  108 gcatactgctt 118  Q
     ||||||||||    
T  26411213 acatactgctt 26411203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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