View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_25 (Length: 330)
Name: NF17004_high_25
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 140 - 303
Target Start/End: Complemental strand, 10379663 - 10379500
Alignment:
| Q |
140 |
gcaacaatttaacactaggtcagaggctcgctgagggcaatgcgagcgatgcaaattcaaaaaacactatcctattaaatataacggaaaaatgcaatat |
239 |
Q |
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| T |
10379663 |
gcaacaatttaacactagttcagaggctcgctgagggcaatgcgagcgatgcaaattcaaaaaacactatcctaataaatataacggaaaaatgcaatat |
10379564 |
T |
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| Q |
240 |
atttataaataagccatattatatctagttaaatcaatattgtattattaacatagtgatgatg |
303 |
Q |
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| T |
10379563 |
atttataaataagccatattatatctagttaaatcaatattgtactattaacatagtgatgatg |
10379500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10379795 - 10379691
Alignment:
| Q |
1 |
aagcatacgagagaggcatcggagagtgttttgagttgcaacagaatgcagttttccatcagatggccatatggaactggcttctccaccctgactctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10379795 |
aagcatacgagagaggcatcggagagtgttttgagttgcaacagaatgcagttttccatcagatggccatatggaactggcttctccaccctgactctca |
10379696 |
T |
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| Q |
101 |
gttgg |
105 |
Q |
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||||| |
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| T |
10379695 |
gttgg |
10379691 |
T |
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