View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_27 (Length: 324)
Name: NF17004_high_27
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 27023008 - 27022708
Alignment:
| Q |
24 |
tcatcagaggggggatattagtagactaacgtggtgaaaaaagtaacctataacaaatccgttatcatttttggacttcggtccatttatcttttcccga |
123 |
Q |
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| T |
27023008 |
tcatcagaggggggatattagtagactaacgtggtgaaaaaagtaacctataacaaatccgttatcatttttggacttcggtccatttatcttttcccga |
27022909 |
T |
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| Q |
124 |
cggnnnnnnnnnnnnnnnnnnnnnntgtgaattatcatctccggtgatgttgaatctccggtcgttcattggcaccgtcgccgtcattctccaaccgtgt |
223 |
Q |
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| T |
27022908 |
cggaaaataaaaaaaataaaaaaaatgtgaattatcatctccggtgatgttgaatctccggtcgttcattggcaccgtcgccgtcattctccaaccgtgt |
27022809 |
T |
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| Q |
224 |
tctccgccgcaggttcgttacttttgcgtcgactttcacttcgaattttgaaattgtttcttcaatttggtagtgaaaaatcattctccatcgcaaatac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27022808 |
tctccgccgcaggttcgttacttttgcgtcgactttcacttcgaattttgaaattgtttcttcaatttggtagtgaaaaatcattctccatcgcaaatac |
27022709 |
T |
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| Q |
324 |
t |
324 |
Q |
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| T |
27022708 |
t |
27022708 |
T |
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