View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_high_30 (Length: 321)

Name: NF17004_high_30
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_high_30
NF17004_high_30
[»] chr4 (1 HSPs)
chr4 (12-287)||(20319223-20319500)
[»] chr7 (2 HSPs)
chr7 (53-175)||(5740907-5741029)
chr7 (90-182)||(9786452-9786545)
[»] chr3 (3 HSPs)
chr3 (96-182)||(20289934-20290020)
chr3 (53-182)||(20337775-20337904)
chr3 (57-178)||(4839381-4839501)
[»] chr1 (1 HSPs)
chr1 (95-182)||(31260124-31260211)
[»] chr6 (2 HSPs)
chr6 (128-182)||(8322421-8322475)
chr6 (103-170)||(19713582-19713649)
[»] chr5 (1 HSPs)
chr5 (72-182)||(17924868-17924978)
[»] chr8 (3 HSPs)
chr8 (54-179)||(20988912-20989036)
chr8 (90-156)||(17971009-17971075)
chr8 (102-170)||(13833090-13833158)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 20319500 - 20319223
Alignment:
Q  12 aatactatttacacacttttgaggcatttaagggatgtcaaatgacttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20319500 aatactatttacacacttttgaggcatttaagggatgtcaaatgacttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagt 20319401  T
Q  112 tagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttccttaaaccaaaacaacatgcatacaggtagaaatgcttattatt 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20319400 tagatttacaacctacatattcctactaaatagtgaagtattaccaaccatccttccttaaaccaaaacaacatgcatacaggtagaaatgcttattatt 20319301  T
Q  212 aatatgggtctacacacac--acaaaaaatgaagnnnnnnnnntcaagagccaaaagctccaaaatttttggtctctt 287  Q
    |||||||||||||||||||  | |||||||||||         |||||||||||||||||||||||||||||||||||    
T  20319300 aatatgggtctacacacacaaaaaaaaaatgaagaaaaaaaaatcaagagccaaaagctccaaaatttttggtctctt 20319223  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 5741029 - 5740907
Alignment:
Q  53 atgacttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtat 152  Q
    |||||||||||||||||  ||||| || |  | ||| ||||||| ||||||||| ||||||||||| ||||||||  |||||||||||| | ||||||||    
T  5741029 atgacttaggttaaggtgggatatttttttgagagtcggctaatcaaacaactttgagttagattttcaacctacggattcctactaaatattgaagtat 5740930  T
Q  153 taccaaccatccttccttaaacc 175  Q
    |||||| | ||||||||||||||    
T  5740929 taccaatcttccttccttaaacc 5740907  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 9786545 - 9786452
Alignment:
Q  90 ggctaataaaacaacttggagttagatttacaacctacatattcctact-aaacagtgaagtattaccaaccatccttccttaaaccaaaacaa 182  Q
    |||||||||||||||||||||||| |||| |||||||   ||||||||| ||||| ||||||||||| |||  ||||||| || ||||||||||    
T  9786545 ggctaataaaacaacttggagttatattttcaacctagtgattcctactaaaacattgaagtattacaaactttccttccatataccaaaacaa 9786452  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 20290020 - 20289934
Alignment:
Q  96 taaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttccttaaaccaaaacaa 182  Q
    ||||||||||||||||||||||| || | |||| |||||||||||||| |||||||||||||||| || || |||||||||||||||    
T  20290020 taaaacaacttggagttagattttcagcttacaaattcctactaaacattgaagtattaccaaccttcatttcttaaaccaaaacaa 20289934  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 20337904 - 20337775
Alignment:
Q  53 atgacttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtat 152  Q
    |||||||| ||||||||  ||||||||  | ||||| |||   ||||||||||||||||||||||| || |||| | ||| |||||||||| ||||||||    
T  20337904 atgacttaagttaaggtgggatatatttgagaaagtaggccggtaaaacaacttggagttagattttcagcctatagatttctactaaacattgaagtat 20337805  T
Q  153 taccaaccatccttccttaaaccaaaacaa 182  Q
    ||  |||  || || |||||||||||||||    
T  20337804 taataacattcatttcttaaaccaaaacaa 20337775  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 4839381 - 4839501
Alignment:
Q  57 cttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtattacc 156  Q
    |||||||||||||  ||||||||  |||| || |||||| ||||||||||| |||||||||  ||||||     ||||||||||||| ||||||| |||     
T  4839381 cttaggttaaggtgagatatattagaaaa-gtaggctaacaaaacaacttgaagttagattatcaacctgaggtttcctactaaacattgaagtactact 4839479  T
Q  157 aaccatccttccttaaaccaaa 178  Q
    |||  |||||||||||||||||    
T  4839480 aacattccttccttaaaccaaa 4839501  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 31260211 - 31260124
Alignment:
Q  95 ataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttccttaaaccaaaacaa 182  Q
    |||||||||  | ||||||||||| ||||||||  |||||||||||||| ||||||||||| |   ||||||||||||||||||||||    
T  31260211 ataaaacaatattgagttagattttcaacctacggattcctactaaacaatgaagtattactagttatccttccttaaaccaaaacaa 31260124  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 8322475 - 8322421
Alignment:
Q  128 atattcctactaaacagtgaagtattaccaaccatccttccttaaaccaaaacaa 182  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||    
T  8322475 atattccaactaaacattgaagtattaccaaccttccttccttaaaccaaaacaa 8322421  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 19713649 - 19713582
Alignment:
Q  103 acttggagttagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttcctt 170  Q
    ||||||||||||| | ||||||||   |||||||||||||| ||| ||||| |||||| |||||||||    
T  19713649 acttggagttagaataacaacctaaggattcctactaaacattgatgtattgccaaccttccttcctt 19713582  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 17924978 - 17924868
Alignment:
Q  72 gatatattctaaaaagttggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttcctta 171  Q
    ||||||||  ||||||| |||||| || |||||||| |||||||||| |||| || | |||||||||||| | ||||| ||| | |||  ||||||||||    
T  17924978 gatatatttgaaaaagtaggctaacaacacaacttgaagttagatttccaacatatagattcctactaaatattgaagcatttcaaactttccttcctta 17924879  T
Q  172 aaccaaaacaa 182  Q
    |||||||||||    
T  17924878 aaccaaaacaa 17924868  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 20989036 - 20988912
Alignment:
Q  54 tgacttaggttaaggtatgatatattctaaaaagttggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtatt 153  Q
    ||||||| ||||||||  ||||||||    ||||| || ||||||||||||||| |||||||||| ||||||| | |||||||||||||| |||| | ||    
T  20989036 tgacttatgttaaggtgggatatatttgggaaagtaggttaataaaacaacttgaagttagattt-caacctatagattcctactaaacattgaaatttt 20988938  T
Q  154 accaaccatccttccttaaaccaaaa 179  Q
    | || |  ||||||||||||||||||    
T  20988937 atcatctttccttccttaaaccaaaa 20988912  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 17971009 - 17971075
Alignment:
Q  90 ggctaataaaacaacttggagttagatttacaacctacatattcctactaaacagtgaagtattacc 156  Q
    |||||| |||||||||||||||||||||| |||| ||   |||||||||||||| ||||||||||||    
T  17971009 ggctaacaaaacaacttggagttagattttcaacttatgaattcctactaaacattgaagtattacc 17971075  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 13833158 - 13833090
Alignment:
Q  102 aacttggagttagatttacaacctacatattcctactaaacagtgaagtattaccaaccatccttcctt 170  Q
    ||||||||||||||||  |||||||   |||||||||||||| |||||| |||| |||| | |||||||    
T  13833158 aacttggagttagattatcaacctaaggattcctactaaacattgaagtgttacaaacccttcttcctt 13833090  T

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