View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17004_high_34 (Length: 309)
Name: NF17004_high_34
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_34 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 27858175 - 27858483
Alignment:
| Q |
1 |
acgatgatccgctacgattttgacaaaagctacattttagagctttatcaaaatcacgatactgtcgtggttatatcaaacccaccacttatccaaacat |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858175 |
acgatgatccaccacgattttgacaaaagctacattttagagctttatcaaaatcacgatactgtcgtggttatatcaaacccaccacttatccaaacat |
27858274 |
T |
|
| Q |
101 |
acacttctacctatttctcattatgtgagcatgcattaaacacatattagtagttatttcaaacttcataacattataaacataattcatgatcaacctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27858275 |
acacttctacctatttctcattatgtgagcatgcattaaacacatattagtagttatttcaaacttcataacattataaacataattcaagatcaacctg |
27858374 |
T |
|
| Q |
201 |
cacattagctccggtaactatgttcggcttatcataaggtttgccttctgcttttctcttagtctgccatttccttttaaaagctaaaccagctaacatt |
300 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858375 |
cacattagctccagtaactatgttaggcttatcataaggtttgccttctgcttttctcttagtctgccatttccttttaaaagctaaaccagctaacatt |
27858474 |
T |
|
| Q |
301 |
attgcctct |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
27858475 |
attgcctct |
27858483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11271810 - 11271770
Alignment:
| Q |
17 |
attttgacaaaagctacattttagagctttatcaaaatcac |
57 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
11271810 |
attttgacaaaaactacactttggagctttatcaaaatcac |
11271770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University