View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_high_37 (Length: 306)

Name: NF17004_high_37
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_high_37
NF17004_high_37
[»] chr2 (7 HSPs)
chr2 (21-175)||(19138361-19138515)
chr2 (173-251)||(17164592-17164670)
chr2 (173-251)||(36250577-36250655)
chr2 (199-251)||(19877507-19877559)
chr2 (252-306)||(19138306-19138360)
chr2 (173-251)||(32212942-32213020)
chr2 (171-251)||(24168198-24168278)
[»] chr3 (8 HSPs)
chr3 (173-251)||(24700097-24700175)
chr3 (173-251)||(8485965-8486043)
chr3 (173-249)||(27237964-27238040)
chr3 (173-234)||(54737170-54737231)
chr3 (173-251)||(47425146-47425224)
chr3 (200-251)||(32834615-32834666)
chr3 (207-251)||(25574666-25574710)
chr3 (199-251)||(46225068-46225120)
[»] chr5 (4 HSPs)
chr5 (179-251)||(17042198-17042270)
chr5 (171-250)||(7933407-7933486)
chr5 (171-250)||(34702904-34702982)
chr5 (63-111)||(34693346-34693394)
[»] chr8 (3 HSPs)
chr8 (173-252)||(19177952-19178030)
chr8 (171-251)||(28239295-28239375)
chr8 (173-242)||(12814983-12815053)
[»] chr4 (6 HSPs)
chr4 (173-251)||(5155502-5155580)
chr4 (171-251)||(17722293-17722373)
chr4 (173-251)||(51746198-51746276)
chr4 (173-251)||(2594448-2594526)
chr4 (174-251)||(17641348-17641425)
chr4 (183-251)||(1979391-1979459)
[»] scaffold0234 (1 HSPs)
scaffold0234 (173-251)||(6945-7023)
[»] chr6 (4 HSPs)
chr6 (179-244)||(16548292-16548357)
chr6 (173-250)||(16730436-16730513)
chr6 (173-251)||(21224552-21224629)
chr6 (183-251)||(27966300-27966368)
[»] chr7 (5 HSPs)
chr7 (173-251)||(8981547-8981625)
chr7 (173-253)||(7705932-7706012)
chr7 (173-251)||(31715307-31715385)
chr7 (171-251)||(26263058-26263138)
chr7 (171-251)||(32913690-32913770)
[»] chr1 (2 HSPs)
chr1 (171-251)||(21112740-21112819)
chr1 (171-251)||(21117482-21117562)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 19138515 - 19138361
Alignment:
Q  21 acatcatcaatggcccccttgtgaattgtcaggtgtatgtagttttaatccaagacattaaagacctcatctctcaaaccaatgtctctattactcatat 120  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19138515 acatcatcaatggcccccttgtgaattgtcagatgtatgtagttttaatccaagacattaaagacctcatctctcaaaccattgtctctattactcatat 19138416  T
Q  121 tctaatagaagggaactagtgtgcagattttctggtgaagcttagaacctcatca 175  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  19138415 tctaatagaagggaactagcgtgcagattttctgatgaagcttagaacctcatca 19138361  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 17164670 - 17164592
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  17164670 tcacctttagttacatcggttgccacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttatgtagtagtg 17164592  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 36250577 - 36250655
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36250577 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 36250655  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 19877507 - 19877559
Alignment:
Q  199 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  19877507 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttttgtagtagtg 19877559  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 19138360 - 19138306
Alignment:
Q  252 gattctagtttgctaattcatgggtaacattcagaatcctcaatctgctaaggaa 306  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  19138360 gattctagtttgctaattcatgggtaatcttcagaatcctcaatctgctgaggaa 19138306  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 32213020 - 32212942
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||  | ||||||| ||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  32213020 tcacctttagttacatcggttgggacccgatgtaaaaagtcgaattccactgatgtgaaatgtcatttctgtagtagtg 32212942  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 24168198 - 24168278
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||| |||||||| | ||  | ||||||||||| || |||||| || ||||||||||||||||||| | ||||||    
T  24168198 catcacctttcgttacatctggtgggacccgatgtgaaaagttgatttccactgatgtgaaatgtcatttctatagtagtg 24168278  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 24700175 - 24700097
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24700175 tcacctttagttacatcggttggaaaccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 24700097  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 8486043 - 8485965
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8486043 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttttgtagtagtg 8485965  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 27237964 - 27238040
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtag 249  Q
    ||||| ||||||||||||||||||| | ||||| ||| |||||||||||||||||| | ||||||||||||| ||||    
T  27237964 tcacccttagttacatcggttgccacctgatgttaaaagtcgatttcaaccgatgtaagatgtcatttctgtagtag 27238040  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 54737231 - 54737170
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatg 234  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||    
T  54737231 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtaaaatg 54737170  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 47425146 - 47425224
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||||||||||||||||||| ||||||    
T  47425146 tcacctttagtcacatcggctgggacccgatgtgaaaagttgatttccactgatgtgaaatgtcatttctgtagtagtg 47425224  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 32834666 - 32834615
Alignment:
Q  200 cgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||| ||||||||  |||||||||||||||||||||||| ||||||    
T  32834666 cgatgtgaaaagtcgattttgaccgatgtgaaatgtcatttctgtagtagtg 32834615  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 25574666 - 25574710
Alignment:
Q  207 aaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||    
T  25574666 aaatgtcgatttccactgatgtgaaatgtcatttctgtagtagtg 25574710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 46225120 - 46225068
Alignment:
Q  199 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||| ||||| | |||| ||||||||||||| ||| ||||||    
T  46225120 ccgatgtgaaatgtcaatttccatcgatatgaaatgtcatttatgtagtagtg 46225068  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 17042270 - 17042198
Alignment:
Q  179 ttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17042270 ttagttacatcggttggcacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 17042198  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 7933486 - 7933407
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 250  Q
    ||||| ||||||| |||||||||   | |||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  7933486 catcatctttagtgacatcggttaggacccgatgtgaaatatcgattccaaccgatgtgaaatgtcatttctgtagtagt 7933407  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 34702904 - 34702982
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 250  Q
    |||| |||||||||||||||| ||  | ||||||||||| ||| || | | | |||||||||||||||||||||||||||    
T  34702904 catcgcctttagttacatcggctgggaaccgatgtgaaaagtcaatatta-cagatgtgaaatgtcatttctgttgtagt 34702982  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 34693346 - 34693394
Alignment:
Q  63 ttttaatccaagacattaaagacctcatctctcaaaccaatgtctctat 111  Q
    ||||| ||||| | ||||||||||||||||||||||  |||||||||||    
T  34693346 ttttagtccaaaatattaaagacctcatctctcaaaataatgtctctat 34693394  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 19178030 - 19177952
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtgg 252  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19178030 tcacctttaattacatcggttggta-ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtgg 19177952  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 28239375 - 28239295
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||| ||||||||||  | ||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||    
T  28239375 catcacctttagtgacatcggttgggacccgatgtgaaatgtcaatttccactgatgtgaaatgtcatttatgtagtagtg 28239295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 12815053 - 12814983
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtg-aaatgtcgatttcaaccgatgtgaaatgtcatttct 242  Q
    ||||||||||||||||||| || || |||||||| ||| |||||||||||  |||||||||| ||||||||    
T  12815053 tcacctttagttacatcgggtgtcacccgatgtgaaaaagtcgatttcaagtgatgtgaaatctcatttct 12814983  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 5155580 - 5155502
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  5155580 tcacctttagttacatcggttgggacccgatgtgaaatgtcgatttccactgatgtgaaatgtcatttctgtagtagtg 5155502  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 17722373 - 17722293
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||||| ||||||||||| || ||||||| ||| || ||||||||||||||||||||||||||||||| ||||||    
T  17722373 catcacctttaggtacatcggttggcacccgatgttaaaagttgatttcaaccgatgtgaaatgtcatttctgtagtagtg 17722293  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 51746198 - 51746276
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||||||||||||| |  | ||||||||||| |||| |||| |||||||||||||||||||||||| ||||||    
T  51746198 tcacctttagttacatcggtagggacccgatgtgaaaagtcgttttccaccgatgtgaaatgtcatttctgtagtagtg 51746276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 2594526 - 2594448
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||  | ||||||| ||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  2594526 tcacctttagttacatcggttgggacccgatgtaaaaagtcgaattccactgatgtgaaatgtcatttctgtagtagtg 2594448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 17641425 - 17641348
Alignment:
Q  174 cacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||| |||||||||   | ||||||||||||||| ||| |||||||||||| ||||||||| ||| ||||||    
T  17641425 cacctttagtgacatcggttaggacccgatgtgaaatgtcaattccaaccgatgtgagatgtcatttatgtagtagtg 17641348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1979459 - 1979391
Alignment:
Q  183 ttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||||| || |||||||||||  ||  ||||||| |||||||||  ||||||||| |||||||    
T  1979459 ttacatcggttgtcaaccgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctgctgtagtg 1979391  T

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Target: scaffold0234 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 6945 - 7023
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||| ||||||||||||||||  | ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  6945 tcacccttagttacatcggttggtacccgatgtgaaatgtcaatttcaatcgatgtgaaatgtcatttctgtagtagtg 7023  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 16548357 - 16548292
Alignment:
Q  179 ttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 244  Q
    ||||||||||||||||  | ||||||||||||||||||||||||  ||||||||||||||||||||    
T  16548357 ttagttacatcggttggtacccgatgtgaaatgtcgatttcaactaatgtgaaatgtcatttctgt 16548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 16730436 - 16730513
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 250  Q
    ||||||||||||||||||| ||  | || |||||||| ||||||||| || ||||| ||||||||||||||| |||||    
T  16730436 tcacctttagttacatcggctgggacccaatgtgaaaagtcgatttccactgatgttaaatgtcatttctgtagtagt 16730513  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 21224629 - 21224552
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||| ||||||| ||  | ||||||||||| ||||||||| || ||||| ||||||||||||||| ||||||    
T  21224629 tcacctttagt-acatcgggtgggacccgatgtgaaaagtcgatttccactgatgttaaatgtcatttctgtagtagtg 21224552  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 27966300 - 27966368
Alignment:
Q  183 ttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||| | ||||||||| || | ||||||| |||||||||  | |||||||| ||||||    
T  27966300 ttacatcggttgccacctgatgtgaaaagtagttttcaactgatgtgaaaacttatttctgtagtagtg 27966368  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 8981625 - 8981547
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    |||||||||| |||||| ||||  | ||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||    
T  8981625 tcacctttagctacatccgttgggacccgatgtgaaaagtcgattccaaccgatgtggaatgtcatttctgtagtagtg 8981547  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 7706012 - 7705932
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtgga 253  Q
    ||||||||||| ||||||| ||  | ||||||||||||||| ||||| || |||||||||||| |||||||| ||||||||    
T  7706012 tcacctttagtcacatcggctgggacccgatgtgaaatgtcaatttccactgatgtgaaatgtgatttctgtagtagtgga 7705932  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 31715307 - 31715385
Alignment:
Q  173 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||||  | ||||||||||| ||||| ||  || ||||||||||||||||| ||| ||||||    
T  31715307 tcacctttagttacatcggttgggatccgatgtgaaaagtcgaatttcactgatgtgaaatgtcatttttgtagtagtg 31715385  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 26263138 - 26263058
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||| ||  | || |||||||| ||||||||| || |||||||||| |||||| ||| ||||||    
T  26263138 catcacctttagttacatcgggtgggacccaatgtgaaaagtcgatttccactgatgtgaaatttcatttatgtagtagtg 26263058  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 32913770 - 32913690
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||||||||||| ||  | ||||| ||||| ||||| ||| ||  |||||||||||||||||||| ||||||    
T  32913770 catcacctttagttacatcgggtgggatccgatttgaaaagtcgaattccactaatgtgaaatgtcatttctgtagtagtg 32913690  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 21112819 - 21112740
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||| ||||||||||||||| ||||||    
T  21112819 catcacctttagtgacatcgggtggga-ccgatgtgaaaagttgatttccactgatgttaaatgtcatttctgtagtagtg 21112740  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 21117562 - 21117482
Alignment:
Q  171 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 251  Q
    ||||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||| |||| |||||||||| ||||||    
T  21117562 catcacctttagtgacatcgggtgggacccgatgtgaaaagttgatttccactgatgttaaatatcatttctgtagtagtg 21117482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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