View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_39 (Length: 300)
Name: NF17004_high_39
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_39 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 6384929 - 6385239
Alignment:
| Q |
6 |
ggtagataattctcctacataattaaatacacacgagctacataactttcccacataattaaatacataactgtcctacatgagtcgactgccaaattaa |
105 |
Q |
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| T |
6384929 |
ggtagataattctcctacataattaaatacacacgagctacataactttcccacataattaaatacataactgtcctacatgagttgactgccaaattaa |
6385028 |
T |
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| Q |
106 |
atacacatgagctacataactaccccgcttaattaaatacataactaa----------------catatgacacagttctacatcatatgccctcttatg |
189 |
Q |
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| T |
6385029 |
atacacatgagctacataactaccccgcttaattaaatacataactaacattgacacagactaccatatgacacagttctacatcatatgccctcttatg |
6385128 |
T |
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| Q |
190 |
gagtatatctttaccttccaagtaggtgagttagtggactttccggtcccatcacatgccaatgtgtttagttgttttttgttataattttttggtgcat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385129 |
gagtatatctttaccttccaagtaggtgagttagtggactttccggtcccatcacatgccaatgtgtttagttgttttttgttataattttttggtgcat |
6385228 |
T |
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| Q |
290 |
ttagtgggaga |
300 |
Q |
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| T |
6385229 |
tttgtgggaga |
6385239 |
T |
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