View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_4 (Length: 432)
Name: NF17004_high_4
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 47038033 - 47038435
Alignment:
| Q |
1 |
ataacaaaatattgggttgattaatagatgatggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagc |
100 |
Q |
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| T |
47038033 |
ataacaaaatattgggttgattaatagatgatggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagc |
47038132 |
T |
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| Q |
101 |
attaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttcaagagccgcttg |
200 |
Q |
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| T |
47038133 |
attaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttgaagagccgcttg |
47038232 |
T |
|
| Q |
201 |
aagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtcgttgttttcttcgtcg |
300 |
Q |
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| T |
47038233 |
aagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtccttgttttcttcgtcg |
47038332 |
T |
|
| Q |
301 |
tcttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgt |
400 |
Q |
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| T |
47038333 |
tcttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgt |
47038432 |
T |
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| Q |
401 |
aag |
403 |
Q |
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| T |
47038433 |
aag |
47038435 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 6026885 - 6026845
Alignment:
| Q |
196 |
gcttgaagagcatcaactctagcaccgactttggtagcttt |
236 |
Q |
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| T |
6026885 |
gcttgaagagcatcaactctagcaccaacttcagtagcttt |
6026845 |
T |
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