View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17004_high_8 (Length: 387)
Name: NF17004_high_8
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 53 - 335
Target Start/End: Original strand, 1820775 - 1821058
Alignment:
| Q |
53 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
152 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1820775 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaa |
1820874 |
T |
|
| Q |
153 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataata-ttcttaaataagtaaatgattgaacttaatggttaataaact |
251 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820875 |
gtaatgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataatatttcttaaataagtaaatgattgaacttaatggttaataaact |
1820974 |
T |
|
| Q |
252 |
ctactaaagtatgacttatttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
335 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820975 |
ctactaaagtatgacttgtttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
1821058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1840972 - 1841184
Alignment:
| Q |
1 |
atcacaacttgtttcaccagaatttgtgtcttcattgtaattattgattccac---------------ggagaaccatcaccggcatgacaacaacattt |
85 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
1840972 |
atcacaacttgtttcactcgaattcgtgtcttcattgtaattattgtttccacatgaataaggtttccggagaaccatcaccggcgtgacaccaacattt |
1841071 |
T |
|
| Q |
86 |
ttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtccatctataaagaaggaa |
185 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
1841072 |
ttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaa |
1841171 |
T |
|
| Q |
186 |
tcgtaaaatttta |
198 |
Q |
| |
|
| |||||||||| |
|
|
| T |
1841172 |
tattaaaatttta |
1841184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 1820719 - 1820753
Alignment:
| Q |
3 |
cacaacttgtttcaccagaatttgtgtcttcattg |
37 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1820719 |
cacaacttgtttcaccagaatttgtgtattcattg |
1820753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University