View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17004_high_9 (Length: 375)
Name: NF17004_high_9
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 47 - 346
Target Start/End: Original strand, 7161367 - 7161666
Alignment:
| Q |
47 |
caagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaatacttgagtgagggtttggttttatctgagacaagatggtggcgcgtg |
146 |
Q |
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| T |
7161367 |
caagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaataattgagtgagggtttggttttatctgagacaagatggtggcgcgtg |
7161466 |
T |
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| Q |
147 |
gttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatgagggatttgactggaa |
246 |
Q |
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| T |
7161467 |
gttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagatatttccaggatttgcagaccgatttgagttgcatgagggatttgactggaa |
7161566 |
T |
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| Q |
247 |
gcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtgaagtgaatctccaggagtgatggaggaggaagatgatgatgc |
346 |
Q |
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| T |
7161567 |
gcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtgaagtgaatctccaggagtgatggaggaggaagatgatgatgc |
7161666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 7169393 - 7169530
Alignment:
| Q |
131 |
aagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatg |
230 |
Q |
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| T |
7169393 |
aagacggtggagcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatg |
7169492 |
T |
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| Q |
231 |
agggatttgactggaagcctggaaagaatttcagccac |
268 |
Q |
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| T |
7169493 |
agaaacttgactggaagcctggagagaatttccgccac |
7169530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 7158440 - 7158387
Alignment:
| Q |
2 |
cattctgatttggtttcaataccttcccctgcttcatcttcgattcaagggagt |
55 |
Q |
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| T |
7158440 |
cattctgatttggtttcaataccttcccctgcttcatcttcgattcaagggagt |
7158387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 7175055 - 7175163
Alignment:
| Q |
143 |
cgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatgagggatttgact |
242 |
Q |
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| T |
7175055 |
cgtggttgacacgcgaaggttcttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgact |
7175154 |
T |
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| Q |
243 |
ggaagcctg |
251 |
Q |
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| T |
7175155 |
ggaagcctg |
7175163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 11237045 - 11236913
Alignment:
| Q |
127 |
agacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttg |
226 |
Q |
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| T |
11237045 |
agacgagatggaggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttg |
11236946 |
T |
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| Q |
227 |
catgagggatttgactggaagcctggaaagaat |
259 |
Q |
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| T |
11236945 |
catgaggtatttgactggcagcctggagagaat |
11236913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 24722641 - 24722586
Alignment:
| Q |
195 |
gatttccaggatttgcagacagatttgagttgcatgagggatttgactggaagcct |
250 |
Q |
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| T |
24722641 |
gatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcct |
24722586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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