View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17004_low_2 (Length: 387)
Name: NF17004_low_2
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 35448274 - 35447918
Alignment:
| Q |
13 |
aatatactaacatttgtctatnnnnnnnnttagatagcatagagatcaaatttactttgnnnnnnnnctcacaaacaatatattatatatagctctcatt |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
35448274 |
aatatactaacatttgtctataaaaaaaattagatagcatagagatcaaatttactttgtttttgt-ctcacaaacaatatattatatatagctcacatt |
35448176 |
T |
|
| Q |
113 |
tattacagaatataggaaagaaaatcatccttattacaaaaccaaacagagtgcatgatccaactgcactatagctcacacttaaaaatccaaagtacta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448175 |
tattacagaatataggaaagaaaatcatccttattacataaccaaacagagtgcatgatccaactgcactatagctcacacttaaaaatccaaagtacta |
35448076 |
T |
|
| Q |
213 |
tattagtataatttataactgcactaataatccagaggataagcagcatctgtgttacacttcaacaagacttttaatgcatgattgttccttatggtgg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35448075 |
tattagtataatttataactgcactaataatccagaggataagcagcatctgtgtcacacttcaacaagacttctaatgcatgattgttccttatggtgg |
35447976 |
T |
|
| Q |
313 |
gttggtaatgttttccaccacttaacaaacgtagaatcccccaaaaacacatccttac |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35447975 |
gttggtaatgttttccaccacttaacaaacgtagaatcccccaaaaacacatccttac |
35447918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 36881739 - 36881795
Alignment:
| Q |
314 |
ttggtaatgttttccaccacttaacaaacgtagaatcccccaaaaacacatccttac |
370 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
36881739 |
ttggtagtgttttccaccacttaacaaacgtagaaccctccaaaaacacatccttac |
36881795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University