View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17004_low_3 (Length: 265)

Name: NF17004_low_3
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17004_low_3
NF17004_low_3
[»] chr4 (20 HSPs)
chr4 (139-249)||(18781731-18781841)
chr4 (85-142)||(5735271-5735328)
chr4 (85-142)||(28166274-28166331)
chr4 (85-142)||(45198544-45198601)
chr4 (85-147)||(46212554-46212616)
chr4 (85-142)||(3901343-3901400)
chr4 (85-142)||(26205908-26205965)
chr4 (85-142)||(46803631-46803688)
chr4 (85-145)||(4264131-4264191)
chr4 (85-148)||(3442548-3442611)
chr4 (89-142)||(21859127-21859180)
chr4 (89-142)||(21914990-21915043)
chr4 (85-142)||(47579287-47579344)
chr4 (85-137)||(37688237-37688289)
chr4 (95-142)||(5744297-5744344)
chr4 (85-144)||(6494586-6494645)
chr4 (85-140)||(28151993-28152048)
chr4 (97-145)||(4209360-4209408)
chr4 (85-137)||(20678791-20678843)
chr4 (85-143)||(23255934-23255992)
[»] chr3 (19 HSPs)
chr3 (85-152)||(43137841-43137908)
chr3 (85-142)||(18659052-18659109)
chr3 (85-145)||(21906993-21907053)
chr3 (85-147)||(7460024-7460086)
chr3 (85-143)||(37832899-37832957)
chr3 (85-142)||(1327311-1327368)
chr3 (85-142)||(8559209-8559266)
chr3 (85-142)||(52668689-52668746)
chr3 (85-142)||(54840332-54840389)
chr3 (85-144)||(29728302-29728361)
chr3 (85-148)||(38492046-38492109)
chr3 (85-144)||(45167297-45167356)
chr3 (85-135)||(38833671-38833721)
chr3 (85-143)||(48707047-48707105)
chr3 (85-146)||(32951340-32951401)
chr3 (85-142)||(34827322-34827379)
chr3 (119-155)||(38833901-38833937)
chr3 (85-133)||(51062399-51062447)
chr3 (85-137)||(51392496-51392548)
[»] chr5 (13 HSPs)
chr5 (85-143)||(42148306-42148364)
chr5 (85-143)||(23988578-23988636)
chr5 (85-146)||(32334844-32334905)
chr5 (85-142)||(35448201-35448258)
chr5 (85-142)||(29627268-29627325)
chr5 (85-142)||(38697963-38698020)
chr5 (85-142)||(39894781-39894838)
chr5 (85-142)||(40512884-40512941)
chr5 (85-141)||(5364421-5364477)
chr5 (85-143)||(37516143-37516201)
chr5 (85-142)||(32002218-32002275)
chr5 (85-142)||(5213126-5213183)
chr5 (85-142)||(35290286-35290343)
[»] chr1 (14 HSPs)
chr1 (85-147)||(52378984-52379046)
chr1 (85-142)||(50539260-50539317)
chr1 (85-144)||(48265015-48265074)
chr1 (85-143)||(25531777-25531835)
chr1 (85-142)||(48219846-48219903)
chr1 (85-141)||(49805456-49805512)
chr1 (85-143)||(32988553-32988611)
chr1 (85-142)||(39354468-39354525)
chr1 (85-144)||(50876362-50876421)
chr1 (85-142)||(3529176-3529233)
chr1 (85-142)||(23569878-23569935)
chr1 (85-142)||(30529254-30529311)
chr1 (85-142)||(38458729-38458786)
chr1 (85-142)||(42708504-42708561)
[»] chr8 (15 HSPs)
chr8 (85-144)||(45081810-45081869)
chr8 (85-143)||(29790941-29790999)
chr8 (85-142)||(3293306-3293363)
chr8 (85-142)||(38845200-38845257)
chr8 (85-145)||(38739654-38739714)
chr8 (85-142)||(30289924-30289981)
chr8 (85-142)||(30380530-30380587)
chr8 (85-142)||(40013651-40013708)
chr8 (85-142)||(43066127-43066184)
chr8 (85-147)||(2805680-2805742)
chr8 (88-142)||(37709899-37709953)
chr8 (97-142)||(8351096-8351141)
chr8 (85-148)||(13138336-13138399)
chr8 (97-143)||(1580981-1581027)
chr8 (85-142)||(2986339-2986396)
[»] scaffold0027 (1 HSPs)
scaffold0027 (85-143)||(117320-117378)
[»] chr7 (16 HSPs)
chr7 (85-142)||(36819696-36819753)
chr7 (85-145)||(19072766-19072826)
chr7 (89-144)||(36905524-36905579)
chr7 (85-143)||(47080979-47081037)
chr7 (85-142)||(2400285-2400342)
chr7 (89-142)||(28185616-28185669)
chr7 (85-142)||(42086842-42086899)
chr7 (85-142)||(47713706-47713763)
chr7 (85-142)||(47713783-47713840)
chr7 (85-142)||(31466562-31466619)
chr7 (85-142)||(32619146-32619203)
chr7 (85-142)||(37951149-37951206)
chr7 (85-142)||(44479924-44479981)
chr7 (98-141)||(31110625-31110668)
chr7 (85-142)||(4612291-4612348)
chr7 (85-142)||(36859412-36859469)
[»] chr6 (11 HSPs)
chr6 (85-142)||(643635-643692)
chr6 (88-145)||(8796047-8796104)
chr6 (85-144)||(11114563-11114622)
chr6 (85-144)||(31854816-31854875)
chr6 (85-142)||(24150741-24150798)
chr6 (85-149)||(22020269-22020333)
chr6 (85-145)||(7098077-7098133)
chr6 (85-148)||(25435406-25435468)
chr6 (85-142)||(18991904-18991961)
chr6 (87-148)||(29403638-29403699)
chr6 (85-142)||(30237165-30237222)
[»] chr2 (19 HSPs)
chr2 (89-142)||(3987440-3987493)
chr2 (85-142)||(14372077-14372134)
chr2 (85-142)||(23671376-23671433)
chr2 (95-142)||(27559575-27559622)
chr2 (85-139)||(14707738-14707792)
chr2 (85-147)||(42038518-42038580)
chr2 (85-142)||(4045437-4045494)
chr2 (85-142)||(16942015-16942072)
chr2 (85-142)||(17012680-17012737)
chr2 (85-142)||(18718239-18718296)
chr2 (85-142)||(34826912-34826969)
chr2 (85-142)||(40425453-40425510)
chr2 (85-142)||(41172961-41173018)
chr2 (85-135)||(38588093-38588143)
chr2 (85-143)||(44283483-44283541)
chr2 (85-150)||(20517411-20517476)
chr2 (85-149)||(44330377-44330441)
chr2 (85-142)||(7443095-7443152)
chr2 (85-141)||(41463721-41463777)
[»] scaffold0051 (1 HSPs)
scaffold0051 (85-144)||(41421-41480)
[»] scaffold0092 (1 HSPs)
scaffold0092 (85-142)||(44312-44369)
[»] scaffold0459 (1 HSPs)
scaffold0459 (85-145)||(12749-12809)
[»] scaffold0366 (2 HSPs)
scaffold0366 (85-145)||(10390-10450)
scaffold0366 (85-145)||(14056-14116)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 18781731 - 18781841
Alignment:
Q  139 agtaatatttatctttgatattgatgttcttgagacaagggaatagtaactacttttacatttctaaaaccgagcgtgttattcagtctcttcattttct 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18781731 agtagtatttatctttgatattgatgttcttgagacaagggaatagtaactacttttacatttccaaaaccgagcgtgttattcagtctcttcattttct 18781830  T
Q  239 caccccactcc 249  Q
    |||||||||||    
T  18781831 caccccactcc 18781841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 5735328 - 5735271
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5735328 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 5735271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 28166331 - 28166274
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  28166331 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 28166274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 45198544 - 45198601
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45198544 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 45198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 46212554 - 46212616
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatt 147  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||| ||||    
T  46212554 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtattatt 46212616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 3901343 - 3901400
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  3901343 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 3901400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 26205908 - 26205965
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  26205908 atgcattggtatgtgtgtaagagtcaactagatcatttatttagggacggagggagta 26205965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 46803688 - 46803631
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  46803688 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 46803631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 4264191 - 4264131
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||    
T  4264191 atgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagtaata 4264131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 3442548 - 3442611
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattt 148  Q
    ||||||||| ||||||||||||| ||||||  | |||||||||||||||||||||||| |||||    
T  3442548 atgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagtagtattt 3442611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 21859127 - 21859180
Alignment:
Q  89 attggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  21859127 attggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 21914990 - 21915043
Alignment:
Q  89 attggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  21914990 attggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 47579344 - 47579287
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||||||| |||| ||||||| | ||||||||||||||||||||||||    
T  47579344 atgcattggtatgtgtgtaagagtcaactaggtcatttatttagggacggagggagta 47579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 37688237 - 37688289
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagg 137  Q
    ||||||||| ||||||||||||| || |||||| |||||||||||||||||||    
T  37688237 atgcattggtatgtgtgtcagagtcatctagatcatttatttagggacggagg 37688289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 5744297 - 5744344
Alignment:
Q  95 atgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  5744297 atgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 5744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 6494645 - 6494586
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||  ||||||||||||| ||||||| | ||||||||||||||||||| ||||||    
T  6494645 atgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagtaat 6494586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 28152048 - 28151993
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggag 140  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||| ||||||||||||    
T  28152048 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggag 28151993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 4209408 - 4209360
Alignment:
Q  97 gtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||||| ||||||||| || |||| |||||||||||||||||||    
T  4209408 gtgtgtcagagtcaactagatcatctattgagggacggagggagtaata 4209360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 20678791 - 20678843
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagg 137  Q
    ||||||||  || |||||||||| ||||||||| |||||||||||||||||||    
T  20678791 atgcattgatatatgtgtcagagtcaactagatcatttatttagggacggagg 20678843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 23255992 - 23255934
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| | ||||||||||| ||||||| | || |||| |||||||||||||||||    
T  23255992 atgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagtaa 23255934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 43137908 - 43137841
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatttatct 152  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  43137908 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtattaattatct 43137841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18659109 - 18659052
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18659109 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 18659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 21907053 - 21906993
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  21907053 atgcattggtatgtgtgtcagagtcaactagatcatttattgagggacggagggagtaata 21906993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7460024 - 7460086
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatt 147  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||| |||| ||||    
T  7460024 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagtagtatt 7460086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 37832957 - 37832899
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||  | |||||||||||||||||||||||||    
T  37832957 atgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagtaa 37832899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 1327368 - 1327311
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||| ||| |||| ||||||||| ||||||||||||||||||||||||    
T  1327368 atgcattggtatgtatgtaagagtcaactagatcatttatttagggacggagggagta 1327311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 8559209 - 8559266
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||| ||||||    
T  8559209 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggatggagta 8559266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 52668689 - 52668746
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||  ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  52668689 atgcattgatatgtgtgtcagagccaactaggtcatttatttagggacggagggagta 52668746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 54840332 - 54840389
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  54840332 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 54840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 29728302 - 29728361
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| |  |||||||||| ||||||| | ||||||| ||||||||||||||||||    
T  29728302 atgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagtaat 29728361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 38492109 - 38492046
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattt 148  Q
    ||||||||| | ||||||||||| ||||||| | | ||||| |||||||||||||||| |||||    
T  38492109 atgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagtactattt 38492046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 45167356 - 45167297
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||| | ||||| ||||||||    
T  45167356 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggatggagtaat 45167297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 38833721 - 38833671
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacgga 135  Q
    ||||||||| ||||||||||||| ||||||| | | |||||||||||||||    
T  38833721 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacgga 38833671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 48707047 - 48707105
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| |||| |||||||  |||||| || | |||||||||||||||||||||||    
T  48707047 atgcattggtatgtatgtcagaatcaactaaatcacttatttagggacggagggagtaa 48707105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 32951340 - 32951401
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatat 146  Q
    ||||||||| |||||||||  || ||||||||| ||||| |  |||||||||||||||||||    
T  32951340 atgcattggtatgtgtgtcgaagtcaactagatcatttaatatgggacggagggagtaatat 32951401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 34827379 - 34827322
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | | ||||| ||||||||||||||||    
T  34827379 atgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 34827322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 38833901 - 38833937
Alignment:
Q  119 atttatttagggacggagggagtaatatttatctttg 155  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  38833901 atttattaagggacggagggagtattatttatctttg 38833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 51062447 - 51062399
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacg 133  Q
    ||||||||| ||||||||||||| ||||||| | | |||||||||||||    
T  51062447 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacg 51062399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 51392496 - 51392548
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagg 137  Q
    ||||||||| |||||||| |||| ||||||| | |||||||||||||| ||||    
T  51392496 atgcattggtatgtgtgtaagagtcaactaggtcatttatttagggacagagg 51392548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 42148364 - 42148306
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  42148364 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtaa 42148306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 23988636 - 23988578
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  23988636 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtaa 23988578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 32334844 - 32334905
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatat 146  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||| |||||||||||||    
T  32334844 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacagagggagtaatat 32334905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 35448201 - 35448258
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  35448201 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 35448258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 29627325 - 29627268
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||  ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  29627325 atgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 29627268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 38698020 - 38697963
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||||||||    
T  38698020 atgcattggtatgtgtgtcagagtcaattaggtcatttatttagggacggagggagta 38697963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 39894838 - 39894781
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||| |||||||| ||||||||| | ||||||||||||||||||||||    
T  39894838 atgcattggtatgtatgtcagagtcaactagatcacttatttagggacggagggagta 39894781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 40512884 - 40512941
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||||||    
T  40512884 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 40512941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 5364477 - 5364421
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagt 141  Q
    ||||||||| ||||||||||||| ||||||| | | |||||||||||||||||||||    
T  5364477 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagt 5364421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 37516201 - 37516143
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| | ||||||||||| ||||||||| || |||| |||||||||||||||||    
T  37516201 atgcattggtacgtgtgtcagagtcaactagatcatctattgagggacggagggagtaa 37516143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 32002218 - 32002275
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||| |||||||| ||| ||||| ||||||||| ||||||||||||||    
T  32002218 atgcattggtatgtatgtcagagtcaagtagatcatttatttaaggacggagggagta 32002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 5213126 - 5213183
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | | ||||| ||||||||||||||||    
T  5213126 atgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 5213183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 35290343 - 35290286
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | || |||| ||||||||||||||||    
T  35290343 atgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 35290286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 52379046 - 52378984
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatt 147  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  52379046 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtagtatt 52378984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 50539317 - 50539260
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  50539317 atgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 50539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 48265015 - 48265074
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  48265015 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtaat 48265074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 25531835 - 25531777
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  25531835 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtaa 25531777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 48219846 - 48219903
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  48219846 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 48219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 49805456 - 49805512
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagt 141  Q
    ||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||    
T  49805456 atgcattggtatgtttgtcagagtcaactagatcatttatttagggacggagggagt 49805512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 32988553 - 32988611
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||||||    
T  32988553 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagagacggagggagtaa 32988611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 39354468 - 39354525
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||| ||||||||    
T  39354468 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacgtagggagta 39354525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 50876421 - 50876362
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| || ||||| |||| ||||||| | ||||||||||||||||||||||||||    
T  50876421 atgcattggtatatgtgttagagtcaactaggtcatttatttagggacggagggagtaat 50876362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 3529233 - 3529176
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  3529233 atgcattggtacgtgtgtcagagtcaactagatcattaattaagggacggagggagta 3529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 23569878 - 23569935
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | |||||||  || ||||||||| ||||||| ||||||||||||||||    
T  23569878 atgcattggtacgtgtgtcgaagtcaactagatcatttattgagggacggagggagta 23569935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 30529254 - 30529311
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |  |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  30529254 atgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagta 30529311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 38458786 - 38458729
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||  ||||||| | ||||||| ||||||||||| ||||    
T  38458786 atgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggaggaagta 38458729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 42708561 - 42708504
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| |||||| || ||||||||| | ||||| ||||||    
T  42708561 atgcattggtatgtgtgtcagagtcaactaaatcatttatttaagaacggaaggagta 42708504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 45081869 - 45081810
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  45081869 atgcattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagtaat 45081810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 29790999 - 29790941
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  29790999 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtaa 29790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 3293306 - 3293363
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||    
T  3293306 atgcattggtatatgtgtcagagtcaactagatcatttatttagggacggagggagta 3293363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 38845257 - 38845200
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  38845257 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 38845200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 38739714 - 38739654
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||| |||||||||||||||||    
T  38739714 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggagtaata 38739654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 30289981 - 30289924
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||| |||||||| ||||||| | ||||||||||||||||||||||||    
T  30289981 atgcattggtatgtatgtcagagtcaactaggtcatttatttagggacggagggagta 30289924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 30380587 - 30380530
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||| ||||| | ||||||||||||||||||||||    
T  30380587 atgcattggtatgtgtgtcagagtcaattagatcacttatttagggacggagggagta 30380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 40013708 - 40013651
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  40013708 atgcattggtatgtgtgtcagagtcaactaggtcatttattaagggacggagggagta 40013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 43066184 - 43066127
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  43066184 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggtagta 43066127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 2805680 - 2805742
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatt 147  Q
    ||||||||| |||| |||||||| ||||| | | |||||||||||||||||||||||| ||||    
T  2805680 atgcattggtatgtatgtcagagtcaactgggtcatttatttagggacggagggagtattatt 2805742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 37709953 - 37709899
Alignment:
Q  88 cattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    |||||| |||||||| |||| ||||||| | ||||||||||||||||||||||||    
T  37709953 cattggtatgtgtgttagagtcaactaggtcatttatttagggacggagggagta 37709899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 8351096 - 8351141
Alignment:
Q  97 gtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||    
T  8351096 gtgtgtcagagtcaactagatcacttatttagggacggagggagta 8351141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 13138336 - 13138399
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattt 148  Q
    ||||||||| | ||||||||||| ||||||| | ||||||| |||||| |||||||||| ||||    
T  13138336 atgcattggtacgtgtgtcagagtcaactaggtcatttattgagggacagagggagtaacattt 13138399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 1580981 - 1581027
Alignment:
Q  97 gtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||||| ||||||| | ||||||| |||||||||||||||||    
T  1580981 gtgtgtcagagtcaactaggtcatttattcagggacggagggagtaa 1581027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 2986396 - 2986339
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | | ||||| || |||||||||||||    
T  2986396 atgcattggtatgtgtgtcagagtcaactaggtcacttattcagagacggagggagta 2986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 117378 - 117320
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  117378 atgcattgatatgtgtgtcagagtcaactagatcatttatttagggacggagggagtaa 117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 36819753 - 36819696
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  36819753 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 36819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 19072826 - 19072766
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| ||||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  19072826 atgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagtaata 19072766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 36905579 - 36905524
Alignment:
Q  89 attggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  36905579 attggtatgtgtgtcagagtcaactaaatcatttatttagggacggagggagtaat 36905524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 47081037 - 47080979
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||| ||||||| | ||| |||||||||||||||||||||    
T  47081037 atgcattggtatgtgtgtcagagtcaactaggtcattcatttagggacggagggagtaa 47080979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 2400342 - 2400285
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| || |||||||||| ||||||| | ||||||||||||||||||||||||    
T  2400342 atgcattggtatatgtgtcagagtcaactaggtcatttatttagggacggagggagta 2400285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 28185616 - 28185669
Alignment:
Q  89 attggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  28185616 attggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 28185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 42086842 - 42086899
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  42086842 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 42086899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 47713706 - 47713763
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||||||    
T  47713706 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 47713783 - 47713840
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||||||    
T  47713783 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 31466562 - 31466619
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | | ||||||||||||||||||||||    
T  31466562 atgcattggtacgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 31466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 32619146 - 32619203
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||  ||||||||||||| ||||||  | ||||||||||||||||||||||||    
T  32619146 atgcattgatatgtgtgtcagagtcaactaagtcatttatttagggacggagggagta 32619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 37951149 - 37951206
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||| ||||||| ||||||| | ||||||||| ||||||||||||||    
T  37951149 atgcattggtatgtgcgtcagagtcaactaggtcatttatttatggacggagggagta 37951206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 44479924 - 44479981
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | | ||||||||||||||||| ||||    
T  44479924 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggaggaagta 44479981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 31110668 - 31110625
Alignment:
Q  98 tgtgtcagagacaactagataatttatttagggacggagggagt 141  Q
    |||||||||| ||||||| | |||||||||||||||||||||||    
T  31110668 tgtgtcagagtcaactaggtcatttatttagggacggagggagt 31110625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 4612291 - 4612348
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| || |||||||||| ||||| | | ||||||||||||||| ||||||||    
T  4612291 atgcattggtatttgtgtcagagtcaactgggtcatttatttagggacgtagggagta 4612348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 36859412 - 36859469
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| |||||||| |||| ||| ||| | ||||||||||| ||||||||||||    
T  36859412 atgcattggtatgtgtgttagagtcaattaggtcatttatttaggaacggagggagta 36859469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 643635 - 643692
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  643635 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 643692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 8796104 - 8796047
Alignment:
Q  88 cattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  8796104 cattggtatgtgtgtcagagtcaactagatgatttatttagggacggagtgagtaata 8796047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 11114622 - 11114563
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| ||||||||||||  ||||||| | ||||||| ||||||||||||||||||    
T  11114622 atgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggagggagtaat 11114563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 31854875 - 31854816
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| |||||| |||||| ||||| | | ||||||||||||||||||||||||||    
T  31854875 atgcattggtatgtgtatcagagtcaactgggtcatttatttagggacggagggagtaat 31854816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 24150798 - 24150741
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||| ||||| ||||||    
T  24150798 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaggaacggatggagta 24150741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 22020333 - 22020269
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattta 149  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||| | ||||| |||||| ||||||    
T  22020333 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagtagtattta 22020269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 7098077 - 7098133
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| ||||||||||||| ||||||||    | |||||||||||||||||||||||    
T  7098077 atgcattggtatgtgtgtcagagtcaactaga----tcatttagggacggagggagtaata 7098133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 25435468 - 25435406
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattt 148  Q
    ||||||||| |||||||||| || ||||||||| ||||||| ||| |||||||||||| |||||    
T  25435468 atgcattggtatgtgtgtca-agtcaactagatcatttattgaggaacggagggagtattattt 25435406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18991961 - 18991904
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | | ||||| ||||||||||||||||    
T  18991961 atgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 18991904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 29403699 - 29403638
Alignment:
Q  87 gcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattt 148  Q
    ||||||| ||||||||||||| ||||||  | ||||||| | |||||||| |||||||||||    
T  29403699 gcattggtatgtgtgtcagagtcaactaagtcatttattaaaggacggagagagtaatattt 29403638  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 30237222 - 30237165
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | || |||| ||||||||||||||||    
T  30237222 atgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 30237165  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 3987440 - 3987493
Alignment:
Q  89 attggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3987440 attggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 3987493  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 14372134 - 14372077
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  14372134 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 14372077  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 23671433 - 23671376
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  23671433 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 23671376  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 27559622 - 27559575
Alignment:
Q  95 atgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  27559622 atgtgtgtcagagtcaactagatcatttatttagggacggagggagta 27559575  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 14707738 - 14707792
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggaggga 139  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||    
T  14707738 atgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 14707792  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 42038580 - 42038518
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatt 147  Q
    ||||||||| ||||||||||||| ||||||| | | |||||||||||||||||||||| ||||    
T  42038580 atgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagtattatt 42038518  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 4045437 - 4045494
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| |||| | || ||||||||||||||||||||||||    
T  4045437 atgcattggtatgtgtgtcagagtcaaccaaatcatttatttagggacggagggagta 4045494  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 16942015 - 16942072
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  16942015 atgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 16942072  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 17012680 - 17012737
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  17012680 atgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 17012737  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18718296 - 18718239
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||  ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  18718296 atgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 18718239  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 34826969 - 34826912
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  34826969 atgcattagtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 34826912  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 40425453 - 40425510
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||  ||||||| | ||||||||||||||||||||||||    
T  40425453 atgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagta 40425510  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 41172961 - 41173018
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||||||||    
T  41172961 atgcattggtatgtgtgtcagagtcaagtaggtcatttatttagggacggagggagta 41173018  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 38588093 - 38588143
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacgga 135  Q
    ||||||||| |||||| |||||| ||||||||| |||||||||||||||||    
T  38588093 atgcattggtatgtgtatcagagtcaactagatcatttatttagggacgga 38588143  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 44283483 - 44283541
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaa 143  Q
    ||||||||| ||||||||||||  ||||||| | ||||||||| |||||||||||||||    
T  44283483 atgcattggtatgtgtgtcagaatcaactaggtcatttatttaaggacggagggagtaa 44283541  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 20517476 - 20517411
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatatttat 150  Q
    ||||||||| ||||||||||||| ||| ||  | |||||||||| ||||||||||||| |||||||    
T  20517476 atgcattggtatgtgtgtcagagtcaattatgtcatttatttagagacggagggagtattatttat 20517411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 44330441 - 44330377
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaatattta 149  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||| | ||||| |||||| ||||||    
T  44330441 atgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagtagtattta 44330377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 7443095 - 7443152
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| | ||||||||||| ||||||| | | ||||| ||||||||||||||||    
T  7443095 atgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 7443152  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 41463721 - 41463777
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagt 141  Q
    ||||||||| | ||||||| ||| ||||||| | ||||||| |||||||||||||||    
T  41463721 atgcattggtacgtgtgtcggagtcaactaggtcatttattgagggacggagggagt 41463777  T

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Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 41421 - 41480
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaat 144  Q
    ||||||||| ||||||||||||| ||||||| | ||||||| ||||||||||||||||||    
T  41421 atgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagtaat 41480  T

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Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 44312 - 44369
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagta 142  Q
    ||||||||| ||| ||||||||| ||||||| | ||||||||||||||||||||||||    
T  44312 atgcattggtatgcgtgtcagagtcaactaggtcatttatttagggacggagggagta 44369  T

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Target: scaffold0459 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 12809 - 12749
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||| | ||||||||||||| ||||||| | | |||||||||||||||||||||||||    
T  12809 atgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagtaata 12749  T

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Target: scaffold0366 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 10450 - 10390
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||| | ||||||||||||| ||||||| | | |||||||||||||||||||||||||    
T  10450 atgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagtaata 10390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 14116 - 14056
Alignment:
Q  85 atgcattggaatgtgtgtcagagacaactagataatttatttagggacggagggagtaata 145  Q
    ||||||||| | |||| |||||| ||||||| | | |||||||||||||||||||||||||    
T  14116 atgcattggtacgtgtatcagagtcaactaggtcacttatttagggacggagggagtaata 14056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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