View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17004_low_4 (Length: 241)
Name: NF17004_low_4
Description: NF17004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17004_low_4 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1712 - 1943
Alignment:
| Q |
1 |
tccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcataga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1712 |
tccttttcagaatgatggagtaacatttcttattaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctatccttgatcataga |
1811 |
T |
|
| Q |
101 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1812 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
1911 |
T |
|
| Q |
201 |
tatggcgcccttgggaatttctatttgatgat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
1912 |
tatggcgcccttgggaatttctatttgatgat |
1943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 82823 - 82592
Alignment:
| Q |
1 |
tccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcataga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
82823 |
tccttttcagaatgatggagtaacatttcttattaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctatccttgatcataga |
82724 |
T |
|
| Q |
101 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82723 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
82624 |
T |
|
| Q |
201 |
tatggcgcccttgggaatttctatttgatgat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
82623 |
tatggcgcccttgggaatttctatttgatgat |
82592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18353702 - 18353933
Alignment:
| Q |
1 |
tccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcataga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18353702 |
tccttttgagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctatccttgatcataga |
18353801 |
T |
|
| Q |
101 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
200 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18353802 |
tttctctatgaaaaaaatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
18353901 |
T |
|
| Q |
201 |
tatggcgcccttgggaatttctatttgatgat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
18353902 |
tatggcgcccttgggaatttctatttgatgat |
18353933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13231923 - 13231692
Alignment:
| Q |
1 |
tccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcataga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13231923 |
tccttttgagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctatccttgatcataga |
13231824 |
T |
|
| Q |
101 |
tttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
200 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231823 |
tttctctatgaaaaaaatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtttgggctcctagaa |
13231724 |
T |
|
| Q |
201 |
tatggcgcccttgggaatttctatttgatgat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
13231723 |
tatggcgcccttgggaatttctatttgatgat |
13231692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 36347223 - 36347023
Alignment:
| Q |
11 |
aatgatggagtaacatttcttcttaggcccgaaccaaggaatcc--tatcaatatgattcgaaatggatctcgttctatccttgatcatagatttctcta |
108 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||| ||||| || |||||||||| ||||||| ||||| |||| ||||||||| ||||| || |
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| T |
36347223 |
aatgatggagtgacattccttcttgggcccgaaccaacaaatcccttaaaaatatgattcaaaatggacatcgttttatctttgatcatatttttcttta |
36347124 |
T |
|
| Q |
109 |
tgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacc------cgctagaggaggatttattgaatcacatagtttgggctcctagaata |
202 |
Q |
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|
|||||| |||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
36347123 |
tgaaaactatgaatcagggttcgaagaaggggaaggagtccttgaccaacaattgctggaggaggatttattcaatcacaaagtttgggctcctagaata |
36347024 |
T |
|
| Q |
203 |
t |
203 |
Q |
| |
|
| |
|
|
| T |
36347023 |
t |
36347023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 14504342 - 14504516
Alignment:
| Q |
59 |
aatatgattcgaaatggatctcgttctatccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgac---- |
154 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||| |||| | |||||||||||||| ||||||||||||||||||| | |||||||| || |
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| T |
14504342 |
aatatgattcaaaatggatctagttctattgttgatcattgattcc-ctatgaaaaatatgtatcggggttcgaagaagggtcaagagtcctcaacccgc |
14504440 |
T |
|
| Q |
155 |
--ccgctagaggaggatttattgaatcacatagtttgggctcctagaatatggcgcccttgggaatttctatttgat |
229 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
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|
| T |
14504441 |
aaccgctagaggaagatttattcaatcacatagtttgggctcctagaatat-gagcccttggggctttctatttgat |
14504516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 4105 - 4335
Alignment:
| Q |
11 |
aatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcatagatttctctatg |
110 |
Q |
| |
|
|||||| |||| ||||| |||||| || |||| || ||||||| | ||||||| | |||| ||||| |||||||| ||||||| ||| |||||||| |
|
|
| T |
4105 |
aatgatcgagtgacattgcttcttcggtccgagccggggaatcccttatatatgatgcaaaatagatcttgttctatcgttgatcagagaaatctctatg |
4204 |
T |
|
| Q |
111 |
aaaaatatgaatcggggttcgaagaaggggaaggag------tcctcgacccgc------tagaggaggatttattgaatcacatagtttgggctcctag |
198 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4205 |
aaaaatacgaatcggagtttgaagaaggggaaggagaaggagtactcgacccgcaacagatagaggaggatttattcaatcacatagtttgggctcctag |
4304 |
T |
|
| Q |
199 |
aatatggcgcccttgggaatttctatttgat |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
4305 |
gatatggcgcccttggggctttctatttgat |
4335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 196236 - 196194
Alignment:
| Q |
187 |
ttgggctcctagaatatggcgcccttgggaatttctatttgat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
196236 |
ttgggctcctagaatatggcgcccttgggacaatctatttgat |
196194 |
T |
|
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