View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17005_high_4 (Length: 330)
Name: NF17005_high_4
Description: NF17005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17005_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 37 - 316
Target Start/End: Complemental strand, 23211611 - 23211336
Alignment:
| Q |
37 |
aaacatactagctgaccagtaataataattaaaataaatcaatcacagagagagaagtgcataaaattctcgttgatttcacatggttacctttcttctc |
136 |
Q |
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| T |
23211611 |
aaacatactagctgaccagtaataat---taaaataaatcaatcacagagagagaattgcataaaattctcgttgatttcacatggttacctttcttctc |
23211515 |
T |
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| Q |
137 |
ataaattggtcagaaggagtagatttccaaattaaagcaaaatgaagagtacacacaaaaggcatgaagaggctttttatctttttggtacaatgaagag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23211514 |
ataaattggtcagaaggagtagatttccaaattaaagcaaaatgaagagtacacacaaaaggcatgaagaggctttttatctttttggtacaatgaagag |
23211415 |
T |
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| Q |
237 |
gctgttcttctcgtgtaataattatgtttttgattaccatcccaaactctcaaattaagaaagttaaaggggtaaaactg |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23211414 |
gctgttcttctcgtgtaataattatgttttt-attaccatcccaaactctcaaattaagaaagttaaaggggtaaaactg |
23211336 |
T |
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