View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17005_low_2 (Length: 500)
Name: NF17005_low_2
Description: NF17005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17005_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Complemental strand, 6711617 - 6711147
Alignment:
| Q |
14 |
cacagatcaaaattaatggacatattcagaaatcacaagatatgttcaaagaaatcctcttgacttatttaggagtggaatatcctaccaagagaagaac |
113 |
Q |
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| T |
6711617 |
cacaaatcaaaattaatggacatattcagaaatcacaagatatgttcaaagaaatcctcttgacttatttagtagtggaatatcctaccaagagaagaac |
6711518 |
T |
|
| Q |
114 |
ttttggattgttaaacagcaggtggattggtagcatnnnnnnntgcatctattttgcaaaattcttcaggagctgtatagtgttcgtcaagtgatattta |
213 |
Q |
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| T |
6711517 |
ttttggattgttaaacagcaggtggattggtagcataaaaaaatgcatctattttgcaaaattcttcaggagctgtatagtgtttgtcaagtgatattta |
6711418 |
T |
|
| Q |
214 |
aatacaagtgagttgttagaaaatagaaattacctctgcagggtcaaaaacaaagattcttgatataacttcacgacattcaggagatatttgaacaaag |
313 |
Q |
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| T |
6711417 |
aatacaagtgagttgttagaaaatagaaattacctctgcagggtcaaaaacaaagattcttgatataacttcacgacattcaggagatatttgaacaaag |
6711318 |
T |
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| Q |
314 |
tctggaacggaatactggacactgagaaccctctgcagggaaccaaccaaaaccagtcgggctcacacaatcagaggcgcataaagaaaacatgcaaaca |
413 |
Q |
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| T |
6711317 |
tctggaacggaatactggacactgagaaccctctgcagggaaccaaccaaaaccagtcgggctcacacaatcagaggcgcataaagaaaacatgcaaaca |
6711218 |
T |
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| Q |
414 |
gcttaatatctgatcaacctgaattgtcttccggaagtcctttggattatcgggatcttcaaaaggatatg |
484 |
Q |
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| T |
6711217 |
gcttaatatctgatcaacctgaattgtcttccggaagtcctttggattatcgggatcttcaaaaggatatg |
6711147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 34126744 - 34126865
Alignment:
| Q |
241 |
aattacctctgcagggtcaaaaacaaagattcttgatataacttcacgacattcaggagatatttgaacaaagtctggaacggaatactggacactgaga |
340 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||| | ||||| || |||| ||| |||||| |||||||| |||||||||||||||||| |
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| T |
34126744 |
aattacctctgcagggtcaaaaacaaagatccttgagataaggtggcgacactctggagttatctgaacattgtctggaatggaatactggacactgagt |
34126843 |
T |
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| Q |
341 |
accctctgcagggaaccaacca |
362 |
Q |
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| T |
34126844 |
actctctgcaaggaagcaacca |
34126865 |
T |
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