View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17005_low_3 (Length: 488)

Name: NF17005_low_3
Description: NF17005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17005_low_3
NF17005_low_3
[»] chr5 (13 HSPs)
chr5 (1-451)||(9618754-9619211)
chr5 (1-111)||(1347724-1347834)
chr5 (1-100)||(19969350-19969449)
chr5 (44-111)||(19807073-19807140)
chr5 (42-106)||(20112126-20112190)
chr5 (318-369)||(13712283-13712334)
chr5 (49-110)||(17392589-17392650)
chr5 (319-396)||(19806782-19806859)
chr5 (65-110)||(27358161-27358206)
chr5 (1-93)||(13711926-13712018)
chr5 (66-110)||(19653756-19653800)
chr5 (238-278)||(19806897-19806937)
chr5 (318-394)||(19969676-19969752)
[»] chr6 (1 HSPs)
chr6 (28-100)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (38-96)||(34169-34227)
scaffold0009 (38-96)||(21922-21980)
scaffold0009 (38-96)||(40799-40857)
[»] chr3 (3 HSPs)
chr3 (28-78)||(32226768-32226818)
chr3 (311-369)||(24890844-24890902)
chr3 (35-100)||(32241837-32241902)
[»] chr1 (1 HSPs)
chr1 (49-110)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 9619211 - 9618754
Alignment:
Q  1 caaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619211 caaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 9619112  T
Q  101 ctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaacg-------agagaataaataaaaaccattaacactatc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||    
T  9619111 ctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaacggttaaagagagaataaataaaagccattaacactatc 9619012  T
Q  194 tacggacgtgacaaacaattacctttgaaatggtaaaatcttgaagtttgggacaactttggagcattttcattacatcatcccagtcaaaaaggacatg 293  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619011 tacggacgtgacaaacaattaccttcgaaatggtaaaatcttgaggtttgggacaactttggagcattttcattacatcatcccagtcaaaaaggacatg 9618912  T
Q  294 aaaaatccaatatagtcgaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgc 393  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  9618911 aaaaatccaatatagtcgaagtactgttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccacaactgc 9618812  T
Q  394 aaaaatacaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9618811 aaaaatacaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag 9618754  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1347724 - 1347834
Alignment:
Q  1 caaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 100  Q
    ||||||| ||||||| ||||||| || |||||||||  |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||| |||||||    
T  1347724 caaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgtaagatgagaggaaacacattgaggaacatgatatgggtatatccaatc 1347823  T
Q  101 ctctttggttt 111  Q
    | |||||||||    
T  1347824 cgctttggttt 1347834  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19969350 - 19969449
Alignment:
Q  1 caaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 100  Q
    ||||||||||||||| ||||||| || ||||||||  ||||||||||||||| | ||||||  |||||||||| |||||||||| |||||||||||||||    
T  19969350 caaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacatgatatgggtatttccaatc 19969449  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 19807140 - 19807073
Alignment:
Q  44 acatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggttt 111  Q
    ||||||||||| || ||| | |||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  19807140 acatgttgttagattagaggtaacacattcaggaacatgatatgggtgtttccaatcctttgtggttt 19807073  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 20112190 - 20112126
Alignment:
Q  42 ttacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctcttt 106  Q
    ||||||||||| | | ||||  |||||||||||||||||| || |||||||||||||| ||||||    
T  20112190 ttacatgttgtgagacgagacaaaacacattcaggaacatcatatgggtatttccaattctcttt 20112126  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 13712283 - 13712334
Alignment:
Q  318 ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca 369  Q
    |||||||||||||||||| |||| | |  |||||||||||||||||||||||    
T  13712283 ggttaagttttcaaacacaggaaagcctttgtaatatgaattgatttcttca 13712334  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 17392650 - 17392589
Alignment:
Q  49 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 110  Q
    |||||| |||||| ||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  17392650 ttgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggtt 17392589  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 19806859 - 19806782
Alignment:
Q  319 gttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgcaaa 396  Q
    ||||||||||||||||||| || | |  |||||||| |||||||||||||| ||| | || || || |||||||||||    
T  19806859 gttaagttttcaaacacggaaaagcctttgtaatataaattgatttcttcattggcaagatttgtctccatctgcaaa 19806782  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 27358161 - 27358206
Alignment:
Q  65 aacacattcaggaacatgatgtgggtatttccaatcctctttggtt 110  Q
    |||||| ||||||||||||| ||||||||||| ||| |||||||||    
T  27358161 aacacactcaggaacatgatctgggtatttcctatcatctttggtt 27358206  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13711926 - 13712018
Alignment:
Q  1 caaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatt 93  Q
    ||||||| ||||||| ||||||| ||  ||||| || |||   ||| |||||||||||||| ||||||| || |||||||||||  |||||||    
T  13711926 caaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctttaggaacatgatcagggtatt 13712018  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 19653756 - 19653800
Alignment:
Q  66 acacattcaggaacatgatgtgggtatttccaatcctctttggtt 110  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||    
T  19653756 acacattcaggaacatgacatgggtatttccaatctgctttggtt 19653800  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 19806937 - 19806897
Alignment:
Q  238 agtttgggacaactttggagcattttcattacatcatccca 278  Q
    |||||||||||| ||||||||||||||| ||| ||||||||    
T  19806937 agtttgggacaattttggagcattttcactacctcatccca 19806897  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 19969676 - 19969752
Alignment:
Q  318 ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgca 394  Q
    |||||||||| ||||||| |||| |||  |||||||||||||||||||| || | ||| || | | |||||||||||    
T  19969676 ggttaagtttccaaacactggaaagtctttgtaatatgaattgatttctgcattaggaagactatgccccatctgca 19969752  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 16258249 - 16258321
Alignment:
Q  28 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 100  Q
    |||||| |||||| || |||||||||||||| ||||||||||| ||||||||   || |||||||||||||||    
T  16258249 gatagtctaaaattttgcatgttgttaaatgggatgaaacacactcaggaaccgtatatgggtatttccaatc 16258321  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 34227 - 34169
Alignment:
Q  38 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 96  Q
    ||||||||| ||||| | ||||||||||||||||||||||| ||||| | |||||||||    
T  34227 aatattacacgttgtaagatgagatgaaacacattcaggaatatgatttcggtatttcc 34169  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 21980 - 21922
Alignment:
Q  38 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 96  Q
    |||||| |||||||| | |||||| |||||||||||||||| ||||| | |||||||||    
T  21980 aatattgcatgttgtaagatgagacgaaacacattcaggaatatgatcttggtatttcc 21922  T

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Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 40857 - 40799
Alignment:
Q  38 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 96  Q
    |||||||  |||||| | |||||| |||||||||||||||||||||| | |||||||||    
T  40857 aatattaattgttgtaagatgagacgaaacacattcaggaacatgatcttggtatttcc 40799  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 32226818 - 32226768
Alignment:
Q  28 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaa 78  Q
    |||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  32226818 gatagtctaaaattttgcatgttgttaaatgggatgaaacacattcaggaa 32226768  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 24890902 - 24890844
Alignment:
Q  311 gaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca 369  Q
    ||||| ||||||||||||||||||| ||||   |  |||||||||||||||||||||||    
T  24890902 gaagttcggttaagttttcaaacacaggaaaacctttgtaatatgaattgatttcttca 24890844  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 32241837 - 32241902
Alignment:
Q  35 taaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 100  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||   || ||||| |||||||||    
T  32241837 taaaattttgcatgttgttaaatgggatgaaacacaatcaggaaccgtatatgggtgtttccaatc 32241902  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 26052813 - 26052874
Alignment:
Q  49 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 110  Q
    |||||| |||||||||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  26052813 ttgttagatgagatgaaacacattctggaacatgatctggatattcccaatgctctatggtt 26052874  T

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