View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17006_high_3 (Length: 334)
Name: NF17006_high_3
Description: NF17006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17006_high_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 7543122 - 7543443
Alignment:
| Q |
17 |
atgctaagaaataacgtaagatgacttgtcatcacattgaccccaactatgtaagtgactttgcgccacactcaaggcactatcacattttaccactctt |
116 |
Q |
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| T |
7543122 |
atgctaagaaataacgtaagatgacttgtcatcacactgaccccaactatgtaagtgactttgcgtcacactcaaggtactatcacattttaccactctt |
7543221 |
T |
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| Q |
117 |
tgcacactttcttctcttcaatcttatattgatttgagcgttaaagtgctaa-----cnnnnnnnnnnaagatttctcccccaaacgaaaaaacgtcttc |
211 |
Q |
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| T |
7543222 |
tgcacactttcttctcttcaatcgtatattgacttgagcgttaaagtgctaattttttttttttttttaagatttctctccctaacgagaaaacgtcttc |
7543321 |
T |
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| Q |
212 |
cgtcacgtcaagaaaacaacttcttccgcactaaaatccttttctacgagcacttccacctgtcaccgaagttctagtctactctgaatgttattgattt |
311 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7543322 |
cgtcacatc-agaaaacaacttcttccgcactaaaatccttttttacgagcacttctaccggtcaccgaagttctagtctactctgaatgttattgattt |
7543420 |
T |
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| Q |
312 |
gagcttatagccatgatgattta |
334 |
Q |
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| T |
7543421 |
gagcttatagccatgatgattta |
7543443 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 22346141 - 22346178
Alignment:
| Q |
14 |
aatatgctaagaaataacgtaagatgacttgtcatcaca |
52 |
Q |
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| T |
22346141 |
aatatgctaagaa-taacgtaagatgacttgtcatcaca |
22346178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 17351051 - 17351079
Alignment:
| Q |
26 |
aataacgtaagatgacttgtcatcacatt |
54 |
Q |
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| T |
17351051 |
aataacgtaagatgacttgtcatcacatt |
17351079 |
T |
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