View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17006_high_6 (Length: 315)
Name: NF17006_high_6
Description: NF17006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17006_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 37045566 - 37045863
Alignment:
| Q |
18 |
tacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045566 |
tacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtac |
37045665 |
T |
|
| Q |
115 |
attatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045666 |
attatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataa |
37045765 |
T |
|
| Q |
215 |
caagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgttgtcac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045766 |
caagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgttgtcac |
37045863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 37036219 - 37036523
Alignment:
| Q |
11 |
attatactacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036219 |
attatactacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaa |
37036318 |
T |
|
| Q |
108 |
cttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcaga |
207 |
Q |
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| T |
37036319 |
cttgtatattatacttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcaga |
37036418 |
T |
|
| Q |
208 |
aacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036419 |
aacataacaagctagcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgtt |
37036518 |
T |
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| Q |
308 |
gtcac |
312 |
Q |
| |
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||||| |
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| T |
37036519 |
gtcac |
37036523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 37011605 - 37011830
Alignment:
| Q |
84 |
agaaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggt |
183 |
Q |
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||||||||||||| ||||||||| ||||||||| ||||||||||| || || ||||||| | ||||||||| | |||||||| |||| |||||||||| |
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| T |
37011605 |
agaaatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcatagaaggt |
37011704 |
T |
|
| Q |
184 |
aaaaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggt |
283 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || || || || |||| |||||| |||||| |
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| T |
37011705 |
aagagttgaacacccatcatcagaaacataacaagctagcttattagcaggataatcaagtgccaacaatgataacactgtattcactgtgattattggt |
37011804 |
T |
|
| Q |
284 |
ggttcaagtacaggatctgctgttgt |
309 |
Q |
| |
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||||| || || |||||||||||||| |
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| T |
37011805 |
ggttctagcactggatctgctgttgt |
37011830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 37027703 - 37027923
Alignment:
| Q |
92 |
ctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacag |
191 |
Q |
| |
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|||||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||| |||| ||||||| | | |
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| T |
37027703 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg |
37027802 |
T |
|
| Q |
192 |
aacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaag |
291 |
Q |
| |
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|||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| | ||||| || || |||| |||||| ||||||||||| || |
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| T |
37027803 |
aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgacaacactgtattcactgtgattattggtggttctag |
37027902 |
T |
|
| Q |
292 |
tacaggatctgctgttgtcac |
312 |
Q |
| |
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| |||||||| |||||||| |
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| T |
37027903 |
ccctggatctgccgttgtcac |
37027923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 17656384 - 17656182
Alignment:
| Q |
86 |
aaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaa |
185 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| ||||| ||||| || || |||||| || |||||||| ||||||| |||| |||||||| | | |
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| T |
17656384 |
aaatatctaaaaggagccctaatttgtacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagatta |
17656285 |
T |
|
| Q |
186 |
aaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtgg |
285 |
Q |
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| |||||| |||||||||||||| |||||||||||||| | || ||| ||||||||||| ||||| || ||||||||||| | ||||||||||| ||| |
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| T |
17656284 |
gaggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctgg |
17656185 |
T |
|
| Q |
286 |
ttc |
288 |
Q |
| |
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||| |
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|
| T |
17656184 |
ttc |
17656182 |
T |
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