View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_high_1 (Length: 686)
Name: NF17007_high_1
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 270 - 672
Target Start/End: Original strand, 12224103 - 12224510
Alignment:
| Q |
270 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
369 |
Q |
| |
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|||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||| | |||| |||||||| |||||||||||||||||| || ||| |
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| T |
12224103 |
tatatagcgtgcaaagtatttgatggaaga-tggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctgatccacatgggccgtct |
12224201 |
T |
|
| Q |
370 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcg---------ttgttcaataagctagaacttaga |
460 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| ||| ||| ||||||| |
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| T |
12224202 |
cttatagcttctcactgatgggcaaaaataggcccttggaa---ataaatgcaatatatatgtctcgttctcctcgttgttcaacaaggtaggacttaga |
12224298 |
T |
|
| Q |
461 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12224299 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
12224398 |
T |
|
| Q |
561 |
attgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatgatgtctttgagttt |
660 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12224399 |
attgggtgccaaaccttcagttcaataatgtagattttctgttagattctaagaaggttgttattcttttaggacatatattgatgatgtctttgagttt |
12224498 |
T |
|
| Q |
661 |
agttagtattat |
672 |
Q |
| |
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|||||||||||| |
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| T |
12224499 |
agttagtattat |
12224510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 12223880 - 12224082
Alignment:
| Q |
29 |
tgtaatttttggaaataattaag-ggacaacattcatgttttataggaatgtctgattgtcgtgcaagtttgacgtgcggtgaatttatgggttaattaa |
127 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
12223880 |
tgtaatttttggaaataattacgaggacaacattcatgttttattggaatgtctgactgtcgtgcaagtttggtgtgcggtaaatttatgggataattaa |
12223979 |
T |
|
| Q |
128 |
gattgacagtgcgcttcatcaagattattataatatggattctgttatttttactttgttgcaacaagttactctaatgtagagtgaacattttgtagca |
227 |
Q |
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| T |
12223980 |
gattgacagtgcgcttcatcaag---attataatatggattatgttatttttactttgttgcaacaaattactctaatgtagagtgaacattttgtagca |
12224076 |
T |
|
| Q |
228 |
ataatt |
233 |
Q |
| |
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|||||| |
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| T |
12224077 |
ataatt |
12224082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
542 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
621 |
Q |
| |
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|||||||| ||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 12226220 - 12226267
Alignment:
| Q |
170 |
tgttatttttactttgttgcaacaagttactctaatgtagagtgaaca |
217 |
Q |
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||||||||||||||||||||||||| ||| |||||| |||||||||| |
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| T |
12226220 |
tgttatttttactttgttgcaacaacttaatctaatacagagtgaaca |
12226267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 270 - 651
Target Start/End: Complemental strand, 38246598 - 38246201
Alignment:
| Q |
270 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
369 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||| ||||| ||||| | | | ||| ||||||||||| ||||||||||||||| || || |
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| T |
38246598 |
tatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctgatccacatgggccgact |
38246499 |
T |
|
| Q |
370 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcgttgttc---------aataagctagaacttaga |
460 |
Q |
| |
|
|||||||||| | | ||||| |||| || |||| | |||||||||||| || ||| ||| |||||| | | |||||| ||| |||| || |
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| T |
38246498 |
cttatagcttggtaacaatgggtaaaaccggcccctag-aaggtataaatgaaaaatagatgcctcgttctcctcgtcgcttaataaggtaggacttgga |
38246400 |
T |
|
| Q |
461 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgc---------aacaagtttatata |
551 |
Q |
| |
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|||| ||||||| ||||| || || |||||| ||||| ||| ||| ||||||||||| ||||||||||| |||| || ||||||| || |
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| T |
38246399 |
atgt--cttagaggcgaagagggtaattttatgcttgcaaaaagtacctggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgta |
38246302 |
T |
|
| Q |
552 |
cgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatatattgatgatgt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| ||| ||||||| |
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| T |
38246301 |
cgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgtataaatgatgt |
38246202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 38246862 - 38246633
Alignment:
| Q |
29 |
tgtaatttttggaaataattaag-ggacaacattcatgttttataggaatgtctgattgtcgtgcaagtttgacgtgcggtgaatttatgggttaattaa |
127 |
Q |
| |
|
|||||||| | |||||||||| | ||||| |||||||||||||| |||||| ||| || ||||||||||| | ||| ||||||||||||| ||| |
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| T |
38246862 |
tgtaatttgtagaaataattacgaggacatcattcatgttttattggaatgcttgagtgctgtgcaagtttggcatgccgtgaatttatgggataa---- |
38246767 |
T |
|
| Q |
128 |
gattgacagtgcgcttcatcaagattattataatatggattctgttatttttactttgttgcaacaagttactctaatgtagagtgaacattttgtagca |
227 |
Q |
| |
|
|||||| ||| ||||| ||| |||||| |||||| ||||||||||||||||||||| ||||||| |||||| ||| |||||||| |||||| |||| |
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| T |
38246766 |
gattgatcgtgtgcttcgtcaggattat---aatatgaattctgttatttttactttgtagcaacaacttactccaatacagagtgaaaattttgcagca |
38246670 |
T |
|
| Q |
228 |
ataat-tggagcctatgaaaacacataaacttgaaac |
263 |
Q |
| |
|
||| | ||||||||||| |||||| |||| |||||| |
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|
| T |
38246669 |
atactatggagcctatgggaacacagaaacctgaaac |
38246633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 46210682 - 46210779
Alignment:
| Q |
569 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgatgtctttgagtttagtta |
665 |
Q |
| |
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||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| | |||||||| |||| |
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| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgataacattgagtttggtta |
46210779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 9170728 - 9170632
Alignment:
| Q |
154 |
attataatatggattctgttatttttactttgttgcaacaag-ttactctaatgtagagtgaacattttgtagcaataat-tggagcctatgaaaac |
248 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||| | ||||||||||| |||| |
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| T |
9170728 |
attataatatgaattatgttatttttactttgttgcaacaagcttactccaatgcagagtgaccattttgtagcaatactatggagcctatggaaac |
9170632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 660
Target Start/End: Complemental strand, 9170325 - 9170215
Alignment:
| Q |
547 |
atatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatg |
646 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||| |||| | |||||||| |||| ||| ||| |
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| T |
9170325 |
atataagacatttgattgggtggcaaagcttg-gtttgataatgtagattttttgttagattataagattgttg--actcttttagaacatgtatagata |
9170229 |
T |
|
| Q |
647 |
atgtctttgagttt |
660 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
9170228 |
atgtcattgagttt |
9170215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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