View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17007_high_11 (Length: 337)
Name: NF17007_high_11
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 35429502 - 35429821
Alignment:
| Q |
1 |
tagatcaatactatcaatgttctatttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429502 |
tagatcaatactatcaatgttctatttctcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaat |
35429601 |
T |
|
| Q |
101 |
ttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429602 |
ttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatgga |
35429701 |
T |
|
| Q |
201 |
tgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429702 |
tgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgt |
35429801 |
T |
|
| Q |
301 |
tcattgtttcaggtttattg |
320 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
35429802 |
tcattgtttcaggtgtattg |
35429821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 35420363 - 35420682
Alignment:
| Q |
1 |
tagatcaatactatcaatgttctatttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| | || ||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
35420363 |
tagatcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaat |
35420462 |
T |
|
| Q |
101 |
ttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420463 |
ttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagttgatctatgga |
35420562 |
T |
|
| Q |
201 |
tgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420563 |
tgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgt |
35420662 |
T |
|
| Q |
301 |
tcattgtttcaggtttattg |
320 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
35420663 |
tcattgtttcaggtgtattg |
35420682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 35423499 - 35423604
Alignment:
| Q |
138 |
ctctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| || |||||||| |||| || || | |||||||| ||| ||| |
|
|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtattagcaagtggattgatcgatgcatcgatcgctcatcttcttattcttgcccattgt |
35423598 |
T |
|
| Q |
238 |
gtcgac |
243 |
Q |
| |
|
|||||| |
|
|
| T |
35423599 |
gtcgac |
35423604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 42974029 - 42974125
Alignment:
| Q |
87 |
gataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
183 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | |||||| ||| |||||| ||| |||||| || |||||||| |||||||||||||||| |
|
|
| T |
42974029 |
gataaatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University