View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17007_high_21 (Length: 214)

Name: NF17007_high_21
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17007_high_21
NF17007_high_21
[»] scaffold0083 (1 HSPs)
scaffold0083 (13-196)||(54372-54552)
[»] chr3 (22 HSPs)
chr3 (13-196)||(9980585-9980765)
chr3 (13-196)||(10035122-10035302)
chr3 (13-196)||(10263820-10264000)
chr3 (69-194)||(10583703-10583829)
chr3 (61-196)||(10520604-10520736)
chr3 (13-196)||(10130041-10130214)
chr3 (61-196)||(9852996-9853128)
chr3 (61-196)||(9841977-9842109)
chr3 (108-196)||(10666654-10666742)
chr3 (13-81)||(10430718-10430786)
chr3 (104-196)||(10360658-10360751)
chr3 (104-196)||(10372768-10372861)
chr3 (119-196)||(10430914-10430991)
chr3 (118-196)||(11778855-11778932)
chr3 (106-194)||(10531902-10531989)
chr3 (118-196)||(11772353-11772430)
chr3 (108-196)||(10092114-10092202)
chr3 (108-196)||(10198996-10199084)
chr3 (108-196)||(10503770-10503857)
chr3 (108-196)||(10680698-10680785)
chr3 (136-196)||(10086294-10086354)
chr3 (136-196)||(10193214-10193274)
[»] chr2 (1 HSPs)
chr2 (154-196)||(26910007-26910049)
[»] chr4 (1 HSPs)
chr4 (136-196)||(17849813-17849873)
[»] chr8 (1 HSPs)
chr8 (154-191)||(11488217-11488254)


Alignment Details
Target: scaffold0083 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 54372 - 54552
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  54372 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 54468  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  54469 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 54552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 9980765 - 9980585
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  9980765 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 9980669  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9980668 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 9980585  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10035302 - 10035122
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  10035302 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 10035206  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||  | |||||| | ||||| ||||||||||||||||||||||||||||    
T  10035205 gaaatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgt 10035122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10264000 - 10263820
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  10264000 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 10263904  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||  ||||| |||||||||||||||||||||| |||||    
T  10263903 gaaatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgt 10263820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 10583829 - 10583703
Alignment:
Q  69 attgattattggcagttttctggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatga 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10583829 attgattattggcagttttctggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatga 10583730  T
Q  168 cagggatgtgagcaattttggaccaat 194  Q
    |||||||||||||||||||||||||||    
T  10583729 cagggatgtgagcaattttggaccaat 10583703  T

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Target: chr3; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 10520736 - 10520604
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10520736 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttatt 10520640  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
      |||||| |||||||||||||||||||||||||||    
T  10520639 gatatgactgggatgtgagcaattttggaccaatgt 10520604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10130214 - 10130041
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||  ||| |||||||    
T  10130214 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagaggattgattattggc---tttctggtaggaact-aggagcatacct 10130119  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||| |||||      || | | ||| ||||||||||||||||||||| ||||||    
T  10130118 gaaatgggaacacaacttgtctatcatattgtgcctttg------atatttttgaaagggatgtgagcaattttggagcaatgt 10130041  T

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Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 9853128 - 9852996
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||    
T  9853128 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatt 9853032  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    | ||||||||||||||||||||||||||||||||||    
T  9853031 tctatgacagggatgtgagcaattttggaccaatgt 9852996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 9842109 - 9841977
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||  |||||     
T  9842109 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatc 9842013  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
      ||||||||||||||||||||||||||| ||||||    
T  9842012 catatgacagggatgtgagcaattttggagcaatgt 9841977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10666742 - 10666654
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10666742 tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 10666654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 10430718 - 10430786
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430718 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc 10430786  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 10360658 - 10360751
Alignment:
Q  104 aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||  ||||||| |||||| |||||||||||||||||||| ||||||    
T  10360658 aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgt 10360751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 10372768 - 10372861
Alignment:
Q  104 aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || ||  ||||||| |||||| |||||||||||||||||||||||||||    
T  10372768 aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgt 10372861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 10430914 - 10430991
Alignment:
Q  119 ggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||  | |||||| | ||||||||||||||||||||||||||||||||||    
T  10430914 ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgt 10430991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 11778855 - 11778932
Alignment:
Q  118 gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||| | ||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||    
T  11778855 gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgt 11778932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 10531989 - 10531902
Alignment:
Q  106 catacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaat 194  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||  |  ||||||  ||||||||||||||||| ||||||||||||||    
T  10531989 catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattattatgacagggatgtgagaaattttggaccaat 10531902  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 11772430 - 11772353
Alignment:
Q  118 gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||| | ||||||||||||||| | |||||| | |||||||||||||||||| |||||||||||||||    
T  11772430 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgt 11772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10092202 - 10092114
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||| |||| ||||||||||||||||||  || ||  ||||||   |||||||||||||||| ||||||||||||||||    
T  10092202 tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgt 10092114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10199084 - 10198996
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||| |||| ||||||||||||||||||  || ||  ||||||   |||||||||||||||| ||||||||||||||||    
T  10199084 tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgt 10198996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10503857 - 10503770
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||||||| | ||||  ||||||||||||||    || ||||| ||||||||||||||||| ||||||||||||||||    
T  10503857 tacctgaaacgggaacacagcctgtcc-tcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgt 10503770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10680785 - 10680698
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| || ||||||||||| |  ||||||||||||||  |  ||||||  ||||||||||||||||| ||||||||||| ||||    
T  10680785 tacctgaaacggaaacacaacttgacc-tcatattgtgacttgcttgtttattattatgacagggatgtgagaaattttggaccgatgt 10680698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 10086354 - 10086294
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||| || |  |||||||| ||||||||| ||| ||| ||||||||||||||||    
T  10086354 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgt 10086294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 10193274 - 10193214
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||| || |  |||||||| ||||||||| ||| ||| ||||||||||||||||    
T  10193274 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgt 10193214  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 26910049 - 26910007
Alignment:
Q  154 atttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26910049 atttatttgtatgacagggatgtgagcaattttggaccaatgt 26910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 17849813 - 17849873
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||| ||  |  |||| ||||||||||||||||||||||||||||||||||    
T  17849813 tcatattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgt 17849873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 11488254 - 11488217
Alignment:
Q  154 atttatttgtatgacagggatgtgagcaattttggacc 191  Q
    |||||||| | |||||||||||||||||||||||||||    
T  11488254 atttatttctttgacagggatgtgagcaattttggacc 11488217  T

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