View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_10 (Length: 376)
Name: NF17007_low_10
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 361
Target Start/End: Original strand, 2504209 - 2504547
Alignment:
| Q |
22 |
tcgttagtaaattagtagttatgttagttttcagagttcgaatcctggatctcattcttaaaacttcttcggtatcccttagatcaccggctgagctacc |
121 |
Q |
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| T |
2504209 |
tcgttagtaaattagtagttatgttagttttcagagttcgaatcctggatctcattcttaaaacttcttcggtatcccttagatcaccggctgagctacc |
2504308 |
T |
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| Q |
122 |
tacgcggaacagtaatgatagagtctaggggaaacaattatggtggaaaagtgggcattagattattgttttactataataatcagatagagacaagcca |
221 |
Q |
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| T |
2504309 |
tacgcggaacagtaatgatagagtctaggg-aaacaattatggtggaaaagtgggcattagatcattggtttactataataatcagatagagacaagcca |
2504407 |
T |
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| Q |
222 |
tgctgattagtggttactaatccatcacaaataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgcta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504408 |
tgctgattagtggttactaatccatcacaaataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgcta |
2504507 |
T |
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| Q |
322 |
gatttggaaactgtcttttttaataatgactagtgttgat |
361 |
Q |
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| T |
2504508 |
gatttggaaactgtcttttttaataatgactagtgttgat |
2504547 |
T |
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Back To:
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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 1159507 - 1159431
Alignment:
| Q |
33 |
ttagtagttatgttagttttcagagttcgaatcctggatctcattcttaaaacttcttcggtatcccttagatcacc |
109 |
Q |
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||||| ||||||||||||||||| ||| ||||| | || ||| ||||||||||||||||| ||| |||||| ||||| |
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| T |
1159507 |
ttagtggttatgttagttttcagggtttgaatcttagacctctttcttaaaacttcttcgatattccttagctcacc |
1159431 |
T |
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