View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_11 (Length: 373)
Name: NF17007_low_11
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 33 - 357
Target Start/End: Original strand, 15574625 - 15574951
Alignment:
| Q |
33 |
ttgtgaaaagataacatcttcaaaatgtatctaaccatttgtgtatactttttcaagatcaaaagttgtt-caaaataaaagaagcccgacataatataa |
131 |
Q |
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| T |
15574625 |
ttgtgaaaagataacatcttcaaaatgtatctaaccatttgtgtatactttttcaagatcaaaagttgtttcaaaataaaagaagcccgacataatataa |
15574724 |
T |
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| Q |
132 |
taacaaatatctaataagatagcactaaaacaatatgcaccccaatagctcatcaaattacaatgatacatcatccaaataacctgataaaaaacttatt |
231 |
Q |
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| T |
15574725 |
taacaaatatctaataagatagcactaaaacaatatgcaccccaatagctcatcaaattacaatgatacatcatccaaataacctgataaaaaacttatt |
15574824 |
T |
|
| Q |
232 |
aaatggaaaatgttttactaaaataaga-ttaacaaatgagtatcgtggttgtcaagaacaaatcctactttgaattactgaacaacttttctgttgtag |
330 |
Q |
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| T |
15574825 |
aaatggaaaatgttttactaaaataagatttatcaaatgagtatcgtggttgtcaagaacaaatcctactttgaattactgaacaacttttctgttgtag |
15574924 |
T |
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| Q |
331 |
aagatgcaagtgatagatacttctttc |
357 |
Q |
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| T |
15574925 |
aagatgcaagtgatagatacttctttc |
15574951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 8339941 - 8339849
Alignment:
| Q |
33 |
ttgtgaaaagataacatcttcaaaatgtatctaaccatttgtgtatactttttcaagatcaaaagttgttcaaaataaaagaagcccgacataa |
126 |
Q |
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| T |
8339941 |
ttgtcaaaagattacatcttcacaatgtatctaaccatttgcatacaattttttaagat-tacagttgtttaaaacaaaagaagcccgacataa |
8339849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 8339791 - 8339757
Alignment:
| Q |
182 |
catcaaattacaatgatacatcatccaaataacct |
216 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
8339791 |
catcaaattacaatgatatatcatccaaataacct |
8339757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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