View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_15 (Length: 329)
Name: NF17007_low_15
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_15 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 34 - 329
Target Start/End: Original strand, 11195655 - 11195947
Alignment:
| Q |
34 |
tcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccg |
133 |
Q |
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||||||| ||||||| |||||| ||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| | || |||||||| |
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| T |
11195655 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaaattgttcttgttccg |
11195754 |
T |
|
| Q |
134 |
caaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatc |
233 |
Q |
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||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
11195755 |
caaccacgtta---acatcgagccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatc |
11195851 |
T |
|
| Q |
234 |
atttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11195852 |
atttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
11195947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 329
Target Start/End: Original strand, 11155208 - 11155500
Alignment:
| Q |
34 |
tcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccg |
133 |
Q |
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||||||| ||||||| |||||| ||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| | || |||||||| |
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| T |
11155208 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaaattgttcttgttccg |
11155307 |
T |
|
| Q |
134 |
caaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatc |
233 |
Q |
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||| ||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11155308 |
caatcacgtta---acatcgagccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaactaatatccttatc |
11155404 |
T |
|
| Q |
234 |
atttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
329 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11155405 |
atttatagcattcctcatgttgtatgcatacgtctctagtacaactctcgcttctaccttcttcatatacctcttgtcttcatctttgtacttctc |
11155500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 11208296 - 11208601
Alignment:
| Q |
21 |
aaccgtagcaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
120 |
Q |
| |
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|||| ||| |||||||| || ||||||| ||||||||||||| |||||| ||||||| || || |||||||||||||||||| ||||| | ||||| |
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| T |
11208296 |
aaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctataacactcaaaa |
11208395 |
T |
|
| Q |
121 |
tcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaac |
220 |
Q |
| |
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||||||||||| | ||| |||||| | || |||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | | |
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| T |
11208396 |
tcttgttgttctactacc---ttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatcttttccttttcttttgacgaaagcttcgagc |
11208492 |
T |
|
| Q |
221 |
taatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatcttt |
320 |
Q |
| |
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||| || ||||||||| | || |||||| |||||||| |||||||||| | ||| ||||| ||| | ||||||| ||| |||| ||||||||||||| |
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| T |
11208493 |
taacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgattcaaccttcttcctatgcctcatgtcttcatcttt |
11208592 |
T |
|
| Q |
321 |
gtacttctc |
329 |
Q |
| |
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||| ||||| |
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| T |
11208593 |
gtatttctc |
11208601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 11169474 - 11169773
Alignment:
| Q |
21 |
aaccgtagcaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
120 |
Q |
| |
|
|||| ||| ||||||||||| || ||| ||||||||||||| |||| | | ||||| || || ||||||||||||||||| |||||| ||||| |
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| T |
11169474 |
aaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatgttcaaaa |
11169573 |
T |
|
| Q |
121 |
tcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaac |
220 |
Q |
| |
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||||||||||| |||||||| |||||| || |||||| | |||||||||||| |||| |||||||| ||| |||||||||||||||||| |||| | | |
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| T |
11169574 |
tcttgttgttctgcaaccac---attaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtttgccttttcttttgacgaaatcttcgagc |
11169670 |
T |
|
| Q |
221 |
taatatccttatcatttatcgcatt-cctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctt |
319 |
Q |
| |
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|||||||| ||||||||| | ||| |||||| |||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||| |
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| T |
11169671 |
taatatccggatcatttat-gaattccctcatattgtatgcgtacatctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctt |
11169769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 329
Target Start/End: Original strand, 11274872 - 11275163
Alignment:
| Q |
35 |
cttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccgc |
134 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||| | | ||||| || || |||||||||||||||||| ||||| | ||||| ||||||||||| || |
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| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
135 |
aaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatca |
234 |
Q |
| |
|
|||||| |||||| || |||||| | |||||||||||| |||| |||||||| ||||||||||||||| | ||||||||| | ||||||| |||| |
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| T |
11274972 |
aaccac---attaacgtcaagccacttaaagaccaaatcagttgcattattgatgttttccttttcttttaatgaaagcttcgagataatatcgggatca |
11275068 |
T |
|
| Q |
235 |
tttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
329 |
Q |
| |
|
||||| || |||||| |||||||| |||||||||| | ||| ||||||||| | ||| ||| ||| ||| |||||||||||||||||||||| |
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|
| T |
11275069 |
tttatgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacctttttcctatgcctaatgtcttcatctttgtacttctc |
11275163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 11242199 - 11242021
Alignment:
| Q |
88 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
187 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||||||| |||||||||||| | |
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|
| T |
11242199 |
acacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccac---attaacatcaagccatgtgaagaccaaat-aattgctttattaa |
11242104 |
T |
|
| Q |
188 |
tcttttccttttct--tttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttct |
268 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
11242103 |
tcttttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttct |
11242021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 329
Target Start/End: Original strand, 11165377 - 11165552
Alignment:
| Q |
154 |
agccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgt |
253 |
Q |
| |
|
|||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| | |||| ||| ||||||||| | || |||||| | |
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|
| T |
11165377 |
agccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
11165476 |
T |
|
| Q |
254 |
tgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
329 |
Q |
| |
|
||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||||||| ||||| |
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|
| T |
11165477 |
tgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctc |
11165552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 162 - 329
Target Start/End: Original strand, 11132051 - 11132218
Alignment:
| Q |
162 |
taagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgca |
261 |
Q |
| |
|
||||||| ||||||||| |||| |||| |||||| |||| | |||||||||||| |||| |||||||| ||||| |||||||||||||| |||||| |
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| T |
11132051 |
taagaccgaatcaattgtgttatcgatcacttccttgtcttctaacgaaagcttcatcataatctccttatcgtttatggcattcctcatgttatatgca |
11132150 |
T |
|
| Q |
262 |
tacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctc |
329 |
Q |
| |
|
||||||| ||| ||| ||| | ||||| ||||||| ||||| ||||||||||||| ||||||||||| |
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|
| T |
11132151 |
cacttctccaatgcatttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctc |
11132218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 264
Target Start/End: Complemental strand, 11315976 - 11315745
Alignment:
| Q |
33 |
ttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttcc |
132 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||| |||||| ||| || ||||||||||| || ||| ||| | |||| || ||||||| |
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|
| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgtttt |
11315877 |
T |
|
| Q |
133 |
gcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttat |
232 |
Q |
| |
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||| || | | ||||||| ||||| ||| |||| ||||||| | ||||||||||| ||||||||||||| ||||| | || ||||||||||||| |
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| T |
11315876 |
gcatcctcatgattaacacgaagccagagtaaagtcaaaccaattgcatcattgatctttttcttttcttttgacaaaagcataaagctaatatccttat |
11315777 |
T |
|
| Q |
233 |
catttatcgcattcctcatgttgtatgcatac |
264 |
Q |
| |
|
|||| || |||| | |||| |||||||||||| |
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|
| T |
11315776 |
cattaatggcatccttcatcttgtatgcatac |
11315745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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