View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_16 (Length: 318)
Name: NF17007_low_16
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 305
Target Start/End: Complemental strand, 5396979 - 5396697
Alignment:
| Q |
23 |
cacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgcttcaatggaaa |
122 |
Q |
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||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5396979 |
cacctccgatcaaataacttaagagacggtgtaaaaactatgtttgtcttaatatgaattatagtgcttgtgttttgtaattcacctgcttcaatggaaa |
5396880 |
T |
|
| Q |
123 |
ccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaa |
222 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5396879 |
ccttccggtggtggtgtgagcaatggtgacagcgggattgaaatgagcaccagagatatgacctatagaatagactaataccataacagcaagtccccaa |
5396780 |
T |
|
| Q |
223 |
acaattgatattccaggaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
305 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396779 |
acaattgatattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
5396697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 5407805 - 5408081
Alignment:
| Q |
23 |
cacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgcttcaatggaaa |
122 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5407805 |
cacctccgctcaaataacttaagaga------gaaacttatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgcttcaatggaaa |
5407898 |
T |
|
| Q |
123 |
ccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaa |
222 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
5407899 |
ccttccggttgtagtgtgagcaatggtgaccgcgggattgaaatgggcaccagagatatgacctatagaatagactaataccataacaacaagtccccaa |
5407998 |
T |
|
| Q |
223 |
acaattgatattccaggaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
305 |
Q |
| |
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||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
5407999 |
acaattgcaattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagaaccacatccagcaaatatcaagaa |
5408081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 305
Target Start/End: Complemental strand, 5388754 - 5388588
Alignment:
| Q |
139 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccag |
238 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||| |
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| T |
5388754 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5388655 |
T |
|
| Q |
239 |
gaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
305 |
Q |
| |
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|| |||| || ||||| || |||| ||| |||||||| ||||||||||| || |||||||||||||| |
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| T |
5388654 |
gatgtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaa |
5388588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 305
Target Start/End: Complemental strand, 5402563 - 5402397
Alignment:
| Q |
139 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccag |
238 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||| |
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| T |
5402563 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5402464 |
T |
|
| Q |
239 |
gaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
305 |
Q |
| |
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|| |||| || ||||| || |||| ||| |||||||| ||||||||||| || |||||||||||||| |
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|
| T |
5402463 |
gatgtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaa |
5402397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 5415296 - 5415136
Alignment:
| Q |
141 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccagga |
240 |
Q |
| |
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||||||||| ||||| || ||||||||||||||||| || ||||||| ||| || | ||| |||||||||| | ||||||| ||| || ||||||||| |
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| T |
5415296 |
agcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccagga |
5415197 |
T |
|
| Q |
241 |
agtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatca |
301 |
Q |
| |
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||||| || || | ||| |||||||| ||||| | ||||||||||| || |||||||||| |
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|
| T |
5415196 |
agtgttactacatgatcattgttaagattcacaataacagcagcacaacccgcaaatatca |
5415136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 36267747 - 36267583
Alignment:
| Q |
141 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccagga |
240 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| || ||||||| ||| || |||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
36267747 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccagga |
36267648 |
T |
|
| Q |
241 |
agtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
305 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| ||| | |||||| || |||||||||||||| |
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|
| T |
36267647 |
agtgttacaacattttcattgttcttgttcaccaacaccgaagcacaaccggcaaatatcaagaa |
36267583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 36262586 - 36262498
Alignment:
| Q |
141 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattg |
229 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||| |||||||||| ||| || | |||||||| | || |||||||||||||||| |
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| T |
36262586 |
agcaatagtaacagcaggattgaaatgagcaccagagatatgaccaagagagtaaatcaataccaacaaagttagtccccaaacaattg |
36262498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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