View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17007_low_17 (Length: 271)

Name: NF17007_low_17
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17007_low_17
NF17007_low_17
[»] chr8 (4 HSPs)
chr8 (19-109)||(1890096-1890186)
chr8 (138-199)||(33842234-33842296)
chr8 (113-170)||(36104391-36104449)
chr8 (138-199)||(6402682-6402744)
[»] chr4 (4 HSPs)
chr4 (114-204)||(14526034-14526124)
chr4 (115-204)||(48583900-48583989)
chr4 (123-179)||(2358812-2358869)
chr4 (155-204)||(6019874-6019923)
[»] chr5 (2 HSPs)
chr5 (114-204)||(41312898-41312988)
chr5 (123-166)||(21031959-21032002)
[»] scaffold0471 (1 HSPs)
scaffold0471 (113-170)||(2506-2564)
[»] chr2 (1 HSPs)
chr2 (113-170)||(42444272-42444330)
[»] chr1 (1 HSPs)
chr1 (138-199)||(11021566-11021628)
[»] scaffold0039 (1 HSPs)
scaffold0039 (138-199)||(102839-102901)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 1890096 - 1890186
Alignment:
Q  19 aagcttgtccgagaagagagtcagattctaagttttgttttcgcctgcgacttgatcatgacagtaactaataaaatctcagatgtttatt 109  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1890096 aagcttgtccaagaagagagtcacattctaagttttgttttcgcctgcgacttcatcatgacagtaactaataaaatctcatatgtttatt 1890186  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 33842234 - 33842296
Alignment:
Q  138 actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt 199  Q
    ||||||||||||||| ||| ||||||||||| || ||||||| ||| ||||||||||||||||    
T  33842234 actcaacacacgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt 33842296  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 36104391 - 36104449
Alignment:
Q  113 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 170  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  36104391 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 36104449  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 6402744 - 6402682
Alignment:
Q  138 actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt 199  Q
    |||||||||| |||| ||| ||||||||||| || ||||||| ||| ||||||||||||||||    
T  6402744 actcaacacatgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt 6402682  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 14526124 - 14526034
Alignment:
Q  114 gagcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt 204  Q
    |||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  14526124 gagcgctgttatacagcacgacaaattcaacacacgaaaaccacacgacatgttcaacagcacgcaattcactttattaatggatttcttt 14526034  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 48583989 - 48583900
Alignment:
Q  115 agcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt 204  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||  |||||||||||| |||||||| ||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacacaacatgttgaacaacacttaattcactttataaatggatttcttt 48583900  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 2358812 - 2358869
Alignment:
Q  123 tatacaacacgacaaactc-aacacacgaaagccacacgacatgttgaacagcaccca 179  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||    
T  2358812 tatacaacacgacaaactctaacacacgaaagccgcaggacatgttgaacatcaccca 2358869  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 6019874 - 6019923
Alignment:
Q  155 cacacgacatgttgaacagcacccaattcactttattaatggattgcttt 204  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  6019874 cacacgacatgttgaacaacacccaattcactttataaatggatttcttt 6019923  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 41312898 - 41312988
Alignment:
Q  114 gagcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt 204  Q
    |||||||||||||||||||||||||||||||||||||| || |||  |  ||||||||  ||||||||||||||||||||| |||| ||||    
T  41312898 gagcgctgctatacaacacgacaaactcaacacacgaatgctacataagttgttgaacgacacccaattcactttattaatagatttcttt 41312988  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 21032002 - 21031959
Alignment:
Q  123 tatacaacacgacaaactcaacacacgaaagccacacgacatgt 166  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  21032002 tatacaacacgaacaacttaacacacgaaagccacacgacatgt 21031959  T

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Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 2506 - 2564
Alignment:
Q  113 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 170  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  2506 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 2564  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 42444330 - 42444272
Alignment:
Q  113 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 170  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  42444330 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 42444272  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 11021566 - 11021628
Alignment:
Q  138 actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt 199  Q
    ||||||||||||||| ||| ||||||||||| || ||||||| ||| ||||||||||||||||    
T  11021566 actcaacacacgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt 11021628  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 102901 - 102839
Alignment:
Q  138 actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt 199  Q
    ||||||||||||||| ||| ||||||||||| || ||||||  ||| ||||||||||||||||    
T  102901 actcaacacacgaaaagccgcacgacatgttcaatagcaccatatttactttattaatggatt 102839  T

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