View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17007_low_26 (Length: 214)

Name: NF17007_low_26
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17007_low_26
NF17007_low_26
[»] scaffold0083 (1 HSPs)
scaffold0083 (13-196)||(54372-54552)
[»] chr3 (22 HSPs)
chr3 (13-196)||(9980585-9980765)
chr3 (13-196)||(10035122-10035302)
chr3 (13-196)||(10263820-10264000)
chr3 (69-194)||(10583703-10583829)
chr3 (61-196)||(10520604-10520736)
chr3 (13-196)||(10130041-10130214)
chr3 (61-196)||(9852996-9853128)
chr3 (61-196)||(9841977-9842109)
chr3 (108-196)||(10666654-10666742)
chr3 (13-81)||(10430718-10430786)
chr3 (104-196)||(10360658-10360751)
chr3 (104-196)||(10372768-10372861)
chr3 (119-196)||(10430914-10430991)
chr3 (118-196)||(11778855-11778932)
chr3 (106-194)||(10531902-10531989)
chr3 (118-196)||(11772353-11772430)
chr3 (108-196)||(10092114-10092202)
chr3 (108-196)||(10198996-10199084)
chr3 (108-196)||(10503770-10503857)
chr3 (108-196)||(10680698-10680785)
chr3 (136-196)||(10086294-10086354)
chr3 (136-196)||(10193214-10193274)
[»] chr2 (1 HSPs)
chr2 (154-196)||(26910007-26910049)
[»] chr4 (1 HSPs)
chr4 (136-196)||(17849813-17849873)
[»] chr8 (1 HSPs)
chr8 (154-191)||(11488217-11488254)


Alignment Details
Target: scaffold0083 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 54372 - 54552
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  54372 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 54468  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  54469 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 54552  T

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Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 9980765 - 9980585
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  9980765 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 9980669  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9980668 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 9980585  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10035302 - 10035122
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  10035302 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 10035206  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||  | |||||| | ||||| ||||||||||||||||||||||||||||    
T  10035205 gaaatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgt 10035122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10264000 - 10263820
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  10264000 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacct 10263904  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||  ||||| |||||||||||||||||||||| |||||    
T  10263903 gaaatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgt 10263820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 10583829 - 10583703
Alignment:
Q  69 attgattattggcagttttctggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatga 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10583829 attgattattggcagttttctggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatga 10583730  T
Q  168 cagggatgtgagcaattttggaccaat 194  Q
    |||||||||||||||||||||||||||    
T  10583729 cagggatgtgagcaattttggaccaat 10583703  T

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Target: chr3; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 10520736 - 10520604
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10520736 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttatt 10520640  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
      |||||| |||||||||||||||||||||||||||    
T  10520639 gatatgactgggatgtgagcaattttggaccaatgt 10520604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10130214 - 10130041
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacct 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||  ||| |||||||    
T  10130214 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagaggattgattattggc---tttctggtaggaact-aggagcatacct 10130119  T
Q  113 gaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||||||||||||||||||||||||| |||||      || | | ||| ||||||||||||||||||||| ||||||    
T  10130118 gaaatgggaacacaacttgtctatcatattgtgcctttg------atatttttgaaagggatgtgagcaattttggagcaatgt 10130041  T

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Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 9853128 - 9852996
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||    
T  9853128 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatt 9853032  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    | ||||||||||||||||||||||||||||||||||    
T  9853031 tctatgacagggatgtgagcaattttggaccaatgt 9852996  T

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Target: chr3; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 9842109 - 9841977
Alignment:
Q  61 tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt 160  Q
    |||||| ||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||  |||||     
T  9842109 tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatc 9842013  T
Q  161 tgtatgacagggatgtgagcaattttggaccaatgt 196  Q
      ||||||||||||||||||||||||||| ||||||    
T  9842012 catatgacagggatgtgagcaattttggagcaatgt 9841977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10666742 - 10666654
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10666742 tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgt 10666654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 10430718 - 10430786
Alignment:
Q  13 gtagcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430718 gtagcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc 10430786  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 10360658 - 10360751
Alignment:
Q  104 aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||  ||||||| |||||| |||||||||||||||||||| ||||||    
T  10360658 aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgt 10360751  T

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Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 10372768 - 10372861
Alignment:
Q  104 aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || ||  ||||||| |||||| |||||||||||||||||||||||||||    
T  10372768 aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgt 10372861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 10430914 - 10430991
Alignment:
Q  119 ggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||  | |||||| | ||||||||||||||||||||||||||||||||||    
T  10430914 ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgt 10430991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 11778855 - 11778932
Alignment:
Q  118 gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||| | ||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||    
T  11778855 gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgt 11778932  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 10531989 - 10531902
Alignment:
Q  106 catacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaat 194  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||  |  ||||||  ||||||||||||||||| ||||||||||||||    
T  10531989 catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattattatgacagggatgtgagaaattttggaccaat 10531902  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 11772430 - 11772353
Alignment:
Q  118 gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||| | ||||||||||||||| | |||||| | |||||||||||||||||| |||||||||||||||    
T  11772430 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgt 11772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10092202 - 10092114
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||| |||| ||||||||||||||||||  || ||  ||||||   |||||||||||||||| ||||||||||||||||    
T  10092202 tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgt 10092114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10199084 - 10198996
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||  ||| |||| ||||||||||||||||||  || ||  ||||||   |||||||||||||||| ||||||||||||||||    
T  10199084 tacctgaaacaggagcacagcttgtctatcatattgtgcgttggttgtttattgtgatgacagggatgtgagaaattttggaccaatgt 10198996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10503857 - 10503770
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| ||||||||| | ||||  ||||||||||||||    || ||||| ||||||||||||||||| ||||||||||||||||    
T  10503857 tacctgaaacgggaacacagcctgtcc-tcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgt 10503770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10680785 - 10680698
Alignment:
Q  108 tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||| || ||||||||||| |  ||||||||||||||  |  ||||||  ||||||||||||||||| ||||||||||| ||||    
T  10680785 tacctgaaacggaaacacaacttgacc-tcatattgtgacttgcttgtttattattatgacagggatgtgagaaattttggaccgatgt 10680698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 10086354 - 10086294
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||| || |  |||||||| ||||||||| ||| ||| ||||||||||||||||    
T  10086354 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgt 10086294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 10193274 - 10193214
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    ||||||||||| || |  |||||||| ||||||||| ||| ||| ||||||||||||||||    
T  10193274 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgt 10193214  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 26910049 - 26910007
Alignment:
Q  154 atttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26910049 atttatttgtatgacagggatgtgagcaattttggaccaatgt 26910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 17849813 - 17849873
Alignment:
Q  136 tcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattttggaccaatgt 196  Q
    |||||||||||||| ||  |  |||| ||||||||||||||||||||||||||||||||||    
T  17849813 tcatattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgt 17849873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 11488254 - 11488217
Alignment:
Q  154 atttatttgtatgacagggatgtgagcaattttggacc 191  Q
    |||||||| | |||||||||||||||||||||||||||    
T  11488254 atttatttctttgacagggatgtgagcaattttggacc 11488217  T

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