View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_3 (Length: 477)
Name: NF17007_low_3
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 39710225 - 39710380
Alignment:
| Q |
226 |
atcacataagttgccaattgaatttaatttaaccaataaacacaagtttcttctccatgcacc------ctggtagcacgcttcctctgtatgcaccaga |
319 |
Q |
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| T |
39710225 |
atcacataagtggccaattgaatttaatttaaccaataaacacaagtttcttctccatgcacatgcacactggtagcacgcttcctctgtatgtaccaga |
39710324 |
T |
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| Q |
320 |
gaaacacattttctacactcaagctcatctctactcatatctaccatgttcatttg |
375 |
Q |
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| T |
39710325 |
gaaacacattttctacactcaagctcatctctactcatatctaccatgttcatttg |
39710380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 39709078 - 39709202
Alignment:
| Q |
47 |
tcaactagaaacaacttaaggcaatgtgcaaaccgtnnnnnnnnnttaagcattatgtgggaagttttcnnnnnnnaaacaaactaaaatgagatgtata |
146 |
Q |
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| T |
39709078 |
tcaactagaaacaacttaaggcaatgtgcaaaccgtaaaaaaaaattaagcattatgtgggaagttttctttttttaaacaaactaaaatgagatgtata |
39709177 |
T |
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| Q |
147 |
ttattatgaacaaagaagatttacc |
171 |
Q |
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| T |
39709178 |
ttattatgaacaaagaagatttacc |
39709202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 39710190 - 39710226
Alignment:
| Q |
170 |
cccttcagctgataaaagtgagtgcacaatgctcaat |
206 |
Q |
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| T |
39710190 |
cccttcagctgataaaagtgagtgcacaatgctcaat |
39710226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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