View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_4 (Length: 467)
Name: NF17007_low_4
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 39177547 - 39177994
Alignment:
| Q |
1 |
tctgatataagtttccagaaatgtatgatgcactaaaatgaaggttatttttcatcgagttgagcagatgcacctagattttattagaaactagtgaagc |
100 |
Q |
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| T |
39177547 |
tctgatataagtttccagaaatttatgatgcactaaaatgaaggttatttttcatcgagttgagcagatgcacctagattttattagaaactagtgaagc |
39177646 |
T |
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| Q |
101 |
atactcatacaatctttttattnnnnnnncgtacaaatgactgatccattcttatctgttaacataactatnnnnnnntggggataggaaaggtaatcaa |
200 |
Q |
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| T |
39177647 |
atactcatacaatctttttattaaaaaaacgtacaaatgactgatccattcttatctgttaacataactataaaaaaacggggatgggaaaggtaatcaa |
39177746 |
T |
|
| Q |
201 |
tgtttacatttactataatcaactaatcatgttacattgaggacatactggatagataacaannnnnnnnnnnnnatagttgttttctgctcttccgtcg |
300 |
Q |
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| T |
39177747 |
tgtttacatttactataatcaactaatcatgttacattgaggacatactggatggataacaatttttttttt---atagttgttttctgctcttccgtca |
39177843 |
T |
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| Q |
301 |
gtgaggtggcaaatagatcctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcacttgctt |
400 |
Q |
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| T |
39177844 |
gtgaggtggcaaatagaacctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcat-ccctctcctttgaacttcctcacttgctt |
39177942 |
T |
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| Q |
401 |
tggatttgtgtttctctaagggttcaaagaagtatgtcagatctgcgccttt |
452 |
Q |
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| T |
39177943 |
tggatttgtgtttctctaagggttcaaagaagtatgtcagatctgcgccttt |
39177994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 39161627 - 39161689
Alignment:
| Q |
28 |
atgcactaaaatgaaggttatttttcatcgagttgagcagatgcacctagattttattagaaa |
90 |
Q |
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| T |
39161627 |
atgcactaaaatgaaggttatttttcatcgagttgagcagatgcactttgatattattagaaa |
39161689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 39161691 - 39161736
Alignment:
| Q |
28 |
atgcactaaaatgaaggttatttttcatcgagttgagcagatgcac |
73 |
Q |
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| T |
39161691 |
atgcactaaaatgaaggttatttttcatcgagttgagcatatgcac |
39161736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 39168178 - 39168256
Alignment:
| Q |
343 |
ttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcac-ttgctttggatttgtgtttctctaag |
420 |
Q |
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| T |
39168178 |
ttttctcttttctcataagcagtgacatgccctctcctctgaacttcttcactttgctttggatttgtgattccctaag |
39168256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 44691574 - 44691465
Alignment:
| Q |
319 |
cctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcacttgctttggatttgtgtttctcta |
418 |
Q |
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| T |
44691574 |
cctcaaaagtgacgtaaagatctcctttcttcgtgctcgtatgcaatggcataccctcccctttgaacttcctcacttgcttcggatttgtgattccctg |
44691475 |
T |
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| Q |
419 |
agggttcaaa |
428 |
Q |
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|||| ||||| |
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| T |
44691474 |
agggatcaaa |
44691465 |
T |
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