View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17007_low_5 (Length: 452)

Name: NF17007_low_5
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17007_low_5
NF17007_low_5
[»] chr1 (22 HSPs)
chr1 (50-265)||(35918883-35919098)
chr1 (268-428)||(35919151-35919311)
chr1 (382-428)||(1486698-1486744)
chr1 (343-427)||(2218264-2218347)
chr1 (388-428)||(5944307-5944347)
chr1 (387-428)||(25361910-25361951)
chr1 (387-428)||(44482254-44482295)
chr1 (387-428)||(47989521-47989562)
chr1 (382-426)||(34712372-34712416)
chr1 (389-428)||(7918207-7918246)
chr1 (389-428)||(24577182-24577221)
chr1 (388-426)||(5376495-5376533)
chr1 (388-426)||(6612166-6612204)
chr1 (390-428)||(25272506-25272544)
chr1 (390-428)||(34371737-34371775)
chr1 (383-428)||(20157340-20157385)
chr1 (387-428)||(31694704-31694745)
chr1 (388-428)||(113323-113363)
chr1 (345-381)||(1486646-1486682)
chr1 (388-424)||(9629895-9629931)
chr1 (343-379)||(9630561-9630597)
chr1 (344-380)||(45534131-45534167)
[»] chr6 (27 HSPs)
chr6 (343-428)||(9027202-9027286)
chr6 (346-428)||(9025448-9025529)
chr6 (339-428)||(9911478-9911563)
chr6 (343-428)||(8805524-8805607)
chr6 (343-428)||(7086819-7086904)
chr6 (382-426)||(12696350-12696394)
chr6 (382-428)||(10770663-10770709)
chr6 (342-379)||(3209482-3209519)
chr6 (387-428)||(16766721-16766762)
chr6 (345-381)||(26178620-26178656)
chr6 (344-379)||(17341622-17341657)
chr6 (367-426)||(20370420-20370478)
chr6 (382-424)||(3398646-3398688)
chr6 (382-428)||(17327644-17327690)
chr6 (390-428)||(31384944-31384982)
chr6 (390-424)||(34197139-34197173)
chr6 (387-428)||(8365513-8365554)
chr6 (387-428)||(9107364-9107405)
chr6 (387-428)||(9522915-9522956)
chr6 (343-380)||(10339054-10339091)
chr6 (388-425)||(20576628-20576665)
chr6 (387-428)||(26562713-26562754)
chr6 (384-428)||(2117100-2117143)
chr6 (390-426)||(7973680-7973716)
chr6 (382-426)||(9024165-9024209)
chr6 (386-426)||(16111750-16111790)
chr6 (400-428)||(17341671-17341699)
[»] chr8 (10 HSPs)
chr8 (342-428)||(25566865-25566950)
chr8 (343-381)||(24858097-24858135)
chr8 (337-428)||(13436904-13436999)
chr8 (393-428)||(30077387-30077422)
chr8 (390-428)||(11927083-11927121)
chr8 (390-428)||(15816126-15816164)
chr8 (387-428)||(24362196-24362237)
chr8 (390-426)||(16867202-16867238)
chr8 (392-428)||(26902174-26902210)
chr8 (343-379)||(36450694-36450730)
[»] scaffold0020 (1 HSPs)
scaffold0020 (343-428)||(135263-135347)
[»] chr7 (26 HSPs)
chr7 (344-424)||(11272531-11272617)
chr7 (356-428)||(18215150-18215221)
chr7 (343-428)||(35861988-35862070)
chr7 (382-428)||(5409825-5409871)
chr7 (382-428)||(32094009-32094055)
chr7 (343-426)||(35749922-35750006)
chr7 (383-424)||(5548704-5548745)
chr7 (383-428)||(9778524-9778569)
chr7 (387-428)||(18039023-18039064)
chr7 (387-428)||(24339666-24339707)
chr7 (388-428)||(22602705-22602745)
chr7 (383-426)||(13770717-13770760)
chr7 (343-394)||(32093954-32094005)
chr7 (382-424)||(11890908-11890950)
chr7 (343-381)||(24105759-24105797)
chr7 (343-381)||(38134335-38134373)
chr7 (339-381)||(38804485-38804527)
chr7 (383-428)||(16341520-16341565)
chr7 (389-426)||(18013070-18013107)
chr7 (387-428)||(21560527-21560568)
chr7 (387-428)||(26033455-26033496)
chr7 (389-426)||(27945067-27945104)
chr7 (387-428)||(32308144-32308185)
chr7 (388-428)||(2334274-2334314)
chr7 (392-428)||(19992025-19992061)
chr7 (342-394)||(21568560-21568611)
[»] scaffold0171 (2 HSPs)
scaffold0171 (382-428)||(23444-23490)
scaffold0171 (387-428)||(23535-23576)
[»] chr3 (13 HSPs)
chr3 (382-428)||(25948876-25948922)
chr3 (342-428)||(11610545-11610629)
chr3 (387-428)||(14209137-14209178)
chr3 (344-417)||(25211574-25211648)
chr3 (343-394)||(40052381-40052431)
chr3 (385-428)||(49651778-49651821)
chr3 (390-424)||(14216920-14216954)
chr3 (390-424)||(14223049-14223083)
chr3 (387-424)||(8039829-8039866)
chr3 (343-380)||(21211376-21211413)
chr3 (387-428)||(22774064-22774105)
chr3 (391-428)||(28918025-28918062)
chr3 (343-428)||(32429331-32429415)
[»] chr2 (12 HSPs)
chr2 (343-428)||(33153448-33153535)
chr2 (343-428)||(44635522-44635612)
chr2 (387-426)||(12668417-12668456)
chr2 (388-428)||(32749820-32749860)
chr2 (390-426)||(36756341-36756377)
chr2 (382-428)||(974771-974817)
chr2 (337-379)||(10535679-10535721)
chr2 (340-381)||(11223790-11223831)
chr2 (387-428)||(23058436-23058477)
chr2 (387-428)||(34784976-34785017)
chr2 (387-424)||(35056896-35056933)
chr2 (388-428)||(30717525-30717565)
[»] chr5 (12 HSPs)
chr5 (343-428)||(2436946-2437030)
chr5 (387-424)||(25888287-25888324)
chr5 (387-428)||(39698565-39698606)
chr5 (343-428)||(6471842-6471924)
chr5 (387-426)||(21542056-21542095)
chr5 (343-394)||(27932304-27932354)
chr5 (382-428)||(31084347-31084393)
chr5 (387-428)||(7677729-7677770)
chr5 (387-428)||(21351899-21351940)
chr5 (343-379)||(11596398-11596434)
chr5 (341-381)||(19820326-19820366)
chr5 (343-428)||(38464313-38464399)
[»] scaffold0008 (1 HSPs)
scaffold0008 (387-427)||(263366-263406)
[»] chr4 (15 HSPs)
chr4 (382-425)||(3947755-3947798)
chr4 (343-380)||(16184913-16184950)
chr4 (387-428)||(30982872-30982913)
chr4 (343-426)||(20633508-20633590)
chr4 (393-428)||(54580023-54580058)
chr4 (382-428)||(12895105-12895151)
chr4 (343-381)||(12895214-12895252)
chr4 (342-380)||(29205550-29205588)
chr4 (387-428)||(4383391-4383432)
chr4 (387-428)||(22234884-22234925)
chr4 (387-428)||(28084546-28084587)
chr4 (400-428)||(14126118-14126146)
chr4 (388-428)||(19312359-19312399)
chr4 (342-378)||(30621752-30621788)
chr4 (342-426)||(37203290-37203372)
[»] scaffold0223 (1 HSPs)
scaffold0223 (358-428)||(20196-20261)
[»] scaffold0044 (1 HSPs)
scaffold0044 (387-428)||(53204-53245)
[»] scaffold0236 (1 HSPs)
scaffold0236 (390-428)||(25765-25803)
[»] scaffold0227 (1 HSPs)
scaffold0227 (342-380)||(15053-15091)
[»] scaffold0136 (1 HSPs)
scaffold0136 (390-428)||(3846-3884)
[»] scaffold0025 (1 HSPs)
scaffold0025 (390-428)||(23794-23832)
[»] scaffold0361 (1 HSPs)
scaffold0361 (337-378)||(14611-14652)
[»] scaffold0123 (1 HSPs)
scaffold0123 (387-428)||(44519-44560)
[»] scaffold0050 (1 HSPs)
scaffold0050 (393-426)||(70304-70337)
[»] scaffold0049 (1 HSPs)
scaffold0049 (387-424)||(56950-56987)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 50 - 265
Target Start/End: Original strand, 35918883 - 35919098
Alignment:
Q  50 gtcggtttcacggttagtatcgttttttctgctttgaatgttttgaagtattgcatcgtcaagtgatagtgaatgatttagtttagaagggaaaatggaa 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35918883 gtcggtttcacggttagtatcgttttttctgctttgaaagttttgaagtattgcatcgtcaagtgatagtgattgatttagtttagaagggaaaatggaa 35918982  T
Q  150 ttcaaagctgagttggtcattgcaaagatgaattgacctatttgttagttctttgggttcagtggctcttacttttgtattgaacaatgtcactttgttt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35918983 ttcaaagctgagttggtcattgcaaagatgaattgacctatttgttagttctttgggttcagtggctcttacttttgtattgaacaatgtcactttgttt 35919082  T
Q  250 atcctgttcggattaa 265  Q
    ||||||||||||||||    
T  35919083 atcctgttcggattaa 35919098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 35919151 - 35919311
Alignment:
Q  268 gttctgtttttgtcaatctctgttggataaatttgagaattttgtaaagaagaggatttgttaatgtagtaaattctatgaagcacaaacactcctccga 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  35919151 gttctgtttttgtcaatctctgttggataaatttgagaattttgtaaagaagaggatttgttaatgtagtaaattctatgaagcacggacagtcctccga 35919250  T
Q  368 ttaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35919251 ttaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 35919311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 1486698 - 1486744
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  1486698 cgtgtccgacacgacaccgacacttataattacactgaattatgtga 1486744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 2218347 - 2218264
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtg 427  Q
    |||||||||||  ||||||||| |||||||||||| ||  ||||| |||||||||| ||||||| |||||||||| |||||||||    
T  2218347 ctatgaagcacggacactcctcagattaggcgtgt-cctagtgtcggacacgacaccgacacttgtaattacactaaattatgtg 2218264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 5944347 - 5944307
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  5944347 cgacacgacaccgacacttataattacactgaattatgtga 5944307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 25361951 - 25361910
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  25361951 ccgacacgacactgacacatataattacactgaattatgtga 25361910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 44482295 - 44482254
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  44482295 ccgacacgacaccgacacatataattacactgaattatgtga 44482254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 47989562 - 47989521
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  47989562 ccgacacgacaccgacacttgtaattacactgaattatgtga 47989521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 34712372 - 34712416
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  34712372 cgtgtccgacacgacactgacacatataattacactaaattatgt 34712416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 7918207 - 7918246
Alignment:
Q  389 gacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattatgtga 7918246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 24577182 - 24577221
Alignment:
Q  389 gacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattatgtga 24577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 5376495 - 5376533
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  5376495 cgacacgacaccgacacttttaattacactgaattatgt 5376533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 6612166 - 6612204
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  6612166 cgacacgacaccgacacttgtaattacactgaattatgt 6612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 25272544 - 25272506
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  25272544 acacgacaccgacacttataattacactaaattatgtga 25272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 34371775 - 34371737
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  34371775 acacgacaccgacacatataattacactgaattatgtga 34371737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 20157340 - 20157385
Alignment:
Q  383 gtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||| |||||||||| ||||| ||| |||||||||||||||||||    
T  20157340 gtgtcggacacgacaccgacacatatgattacactgaattatgtga 20157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 31694704 - 31694745
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||| ||||||||||||||    
T  31694704 ccgacacgacaccgacacttgtaattatactgaattatgtga 31694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 113363 - 113323
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtga 113323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 1486646 - 1486682
Alignment:
Q  345 atgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccg 1486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 9629895 - 9629931
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattat 424  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  9629895 cgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 9630561 - 9630597
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtcc 9630597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 45534131 - 45534167
Alignment:
Q  344 tatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  45534131 tatgaagcacaaacactcctcggataaggcgtgtccc 45534167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 9027286 - 9027202
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||||||||  |||||| ||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||||||    
T  9027286 ctatgaagcacaaacactccttggattagccgtgtcccg-gtgtcggacacgacaccgacacatataattacacggaattatgtga 9027202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 9025448 - 9025529
Alignment:
Q  346 tgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||  ||||| ||| |||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccg-gtgtcggacacgacaccgacacatataattacactgaattatgtga 9025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 428
Target Start/End: Original strand, 9911478 - 9911563
Alignment:
Q  339 aattctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||  |||||||||| |||||||||||||| |  ||    ||||||||| ||||||| |||||||||||||||||||||    
T  9911478 aattctatgaagcatgaacactcctcggattaggcgtgtcctggttg----acacgacaccgacacttgtaattacactgaattatgtga 9911563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 8805524 - 8805607
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  ||||||||| |||||||| |||||| |||||| ||||| |||| |||||  ||||||||||| ||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacac--ataattacactaaattatgtga 8805607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 7086904 - 7086819
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  | ||||||| |||||||| |||| | |||||| ||||| |||| ||||| |||||||||||| ||||||||||    
T  7086904 ctatgaagcacggaaactcctcggattaggcatgtctcacgtgtctgacactacaccgacacatataattacactaaattatgtga 7086819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 12696394 - 12696350
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  12696394 cgtgtccgacacgacactgacacttgtaattacactgaattatgt 12696350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 10770663 - 10770709
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  10770663 cgtgtctgacacgacaccgacacttgtaattacactgaattatgtga 10770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 3209519 - 3209482
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3209519 tctatgaagcacaaacactcctcggattaggcgtgtcc 3209482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 16766762 - 16766721
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  16766762 ccgacacgacaccgacacttgtaattacactgaattatgtga 16766721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 26178620 - 26178656
Alignment:
Q  345 atgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26178620 atgaagcacagacactcctccgattaggcgtgtcccg 26178656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 17341622 - 17341657
Alignment:
Q  344 tatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17341622 tatgaagcacaaacactcctcggattaggcgtgtcc 17341657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 426
Target Start/End: Original strand, 20370420 - 20370478
Alignment:
Q  367 attaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    |||| |||||||||| |||||||||| |||||  ||||||||||||||| ||||||||||    
T  20370420 attaagcgtgtcccg-gtgtccgacatgacactcacacttataattacagtgaattatgt 20370478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 3398688 - 3398646
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattat 424  Q
    ||||||| ||||||||| || ||||||||||||||||||||||    
T  3398688 cgtgtccaacacgacaccgatacttataattacactgaattat 3398646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 17327644 - 17327690
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| ||||| |||| ||||||| ||||||||||    
T  17327644 cgtgtccgacacgacactgacacatatagttacactaaattatgtga 17327690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 31384982 - 31384944
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  31384982 acacgacactgacacttgtaattacactgaattatgtga 31384944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 34197173 - 34197139
Alignment:
Q  390 acacgacacggacacttataattacactgaattat 424  Q
    ||||||||| |||||||||||||||||||||||||    
T  34197173 acacgacaccgacacttataattacactgaattat 34197139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 8365513 - 8365554
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| ||||||||| |||||||||||    
T  8365513 ccgacacgacaccgacacttgtaattacaccgaattatgtga 8365554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 9107364 - 9107405
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| ||||||||||||||| |||||    
T  9107364 ccgacacgacaccgacacttgtaattacactgaattttgtga 9107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 9522956 - 9522915
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||| |||| ||||||| |||||||||||||||||||||    
T  9522956 ccgacacaacaccgacacttgtaattacactgaattatgtga 9522915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 10339054 - 10339091
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtccc 10339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 20576628 - 20576665
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatg 425  Q
    |||||||||||  |||||||||||||||||||||||||    
T  20576628 cgacacgacaccaacacttataattacactgaattatg 20576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 26562754 - 26562713
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  ||||| |||||||||||||||||||||||    
T  26562754 ccgacacgacatcgacacatataattacactgaattatgtga 26562713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 2117143 - 2117100
Alignment:
Q  384 tgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||| |||||||||||| || ||||||||||||    
T  2117143 tgtccgacacgacacg-acacttataattgcattgaattatgtga 2117100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 7973716 - 7973680
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  7973716 acacgacaccgacacttataattacacttaattatgt 7973680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 9024165 - 9024209
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||||||||| ||||| ||| |||||| ||||||||||    
T  9024165 cgtgtccgacacgacactgacacatatgattacattgaattatgt 9024209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 16111750 - 16111790
Alignment:
Q  386 tccgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||||| ||||| |||||||||||| ||||||||    
T  16111750 tccgacacgacactgacacctataattacactaaattatgt 16111790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 17341671 - 17341699
Alignment:
Q  400 gacacttataattacactgaattatgtga 428  Q
    |||||||||||||||||||||||||||||    
T  17341671 gacacttataattacactgaattatgtga 17341699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 25566950 - 25566865
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||| ||||||||| |||||||||||||||| |   || ||||||||| ||||||| |||||||||||||||||||||    
T  25566950 tctatgaagcacagacactcctcggattaggcgtgtcccg-gacaccaacacgacaccgacacttgtaattacactgaattatgtga 25566865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 24858135 - 24858097
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  24858135 ctatgaagcacaaacactcctctgattaggcgtgtcccg 24858097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 13436904 - 13436999
Alignment:
Q  337 taaattctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgt-----ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||| ||||||||||||| ||||||||  |||||||||||||||| ||||     |||||||||||| ||||||| | |||||  ||||||||||||    
T  13436904 taaaatctatgaagcacagacactccttggattaggcgtgtcccg-gtgtcgacaccgacacgacaccgacacttgttattaccatgaattatgtga 13436999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Original strand, 30077387 - 30077422
Alignment:
Q  393 cgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||| |||||||||||||||||||||    
T  30077387 cgacacggacacttgtaattacactgaattatgtga 30077422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 11927083 - 11927121
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  11927083 acacgacaccgacacatataattacactgaattatgtga 11927121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 15816126 - 15816164
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  15816126 acacgacaccgacacttataattacactaaattatgtga 15816164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 24362196 - 24362237
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  ||||| |||||||||||||||||||||||    
T  24362196 ccgacacgacattgacacatataattacactgaattatgtga 24362237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 16867202 - 16867238
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  16867202 acacgacaccgacacttataattacactaaattatgt 16867238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 26902174 - 26902210
Alignment:
Q  392 acgacacggacacttataattacactgaattatgtga 428  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  26902174 acgacaccgacacatataattacactgaattatgtga 26902210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 36450694 - 36450730
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcc 36450730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 135263 - 135347
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| ||||| |||| |||||||||||||| | ||||| |||||||||| ||||| ||||||||||| |||||||||||    
T  135263 ctatgaagcacgaacacgcctcagattaggcgtgtcctg-gtgtcggacacgacaccgacacatataattacacagaattatgtga 135347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 11272531 - 11272617
Alignment:
Q  344 tatgaagcacaaacactcctccgattaggcgtgtcccgcgtgt------ccgacacgacacggacacttataattacactgaattat 424  Q
    ||||||||||| | ||||||| |||||||||||||||||||||      |||||||||||| ||||||| |||||||||||||||||    
T  11272531 tatgaagcacagatactcctcggattaggcgtgtcccgcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 18215150 - 18215221
Alignment:
Q  356 acactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| ||||||| ||| ||||||| |||||||||    
T  18215150 acactcctcagattaggcgtgtcccg-gtgtcggacacgacaccgacacttgtaactacactgcattatgtga 18215221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 35862070 - 35861988
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  ||||||||| ||||||||||||||  ||||||||||  ||||| |||||||| ||||||| ||||||||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcct-cgtgtccgac--gacacagacacttacaattacattgaattatgtga 35861988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 5409825 - 5409871
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  5409825 cgtgtccgacacgacaccgacacttgtaattgcactgaattatgtga 5409871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 32094009 - 32094055
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||    
T  32094009 cgtgtccgacacgacaccgacatttgtaattacactgaattatgtga 32094055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 35750006 - 35749922
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccg--acacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||||| |||||||||||| |||| |||||||| || || |  ||||||||| |||||||| ||||||||||||| ||||    
T  35750006 ctatgaagcacagacactcctccgactaggtgtgtcccg-gtttcggacacacgacaccgacacttacaattacactgaataatgt 35749922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 5548745 - 5548704
Alignment:
Q  383 gtgtccgacacgacacggacacttataattacactgaattat 424  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  5548745 gtgtccgacacgacactgacacatataattacactgaattat 5548704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 9778569 - 9778524
Alignment:
Q  383 gtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||    
T  9778569 gtgtccgacacgacaccgacacttgtaattatactgaattatgtga 9778524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 18039064 - 18039023
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  18039064 ccgacacgacaccgacacttgtaattacactgaattatgtga 18039023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 24339707 - 24339666
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  24339707 ccgacacgacaccgacacttgtaattacactgaattatgtga 24339666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 22602705 - 22602745
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  22602705 cgacacgacaccgacacatataattacactgaattatgtga 22602745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 13770760 - 13770717
Alignment:
Q  383 gtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||||||||  ||||||| |||||||||||||||||||    
T  13770760 gtgtccgacacgacaacgacacttgtaattacactgaattatgt 13770717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 32093954 - 32094005
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacg 394  Q
    ||||||||||| |||||||||| |||||||||||||||  ||||| ||||||    
T  32093954 ctatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacg 32094005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 11890908 - 11890950
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattat 424  Q
    |||||||||||||||||  ||||| ||||||||||||||||||    
T  11890908 cgtgtccgacacgacacctacactcataattacactgaattat 11890950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 24105797 - 24105759
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  24105797 ctatgaagcacaaacactcctcgggttaggcgtgtcccg 24105759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 38134335 - 38134373
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  38134335 ctatgaagcacatacactcctcggattaggcgtgtcccg 38134373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 38804485 - 38804527
Alignment:
Q  339 aattctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||||||||| ||||||||| |||||||| |||||||    
T  38804485 aattctatgaagcacatacactcctcggattaggcatgtcccg 38804527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 16341565 - 16341520
Alignment:
Q  383 gtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||| | ||| |||||||||||| ||||||||||    
T  16341565 gtgtccgacacgacaccggcacatataattacacttaattatgtga 16341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 18013070 - 18013107
Alignment:
Q  389 gacacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  18013070 gacacgacactgacacatataattacactgaattatgt 18013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 21560568 - 21560527
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  21560568 ccgatacgacaccgacacttgtaattacactgaattatgtga 21560527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 26033455 - 26033496
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| || ||||||| |||||||||||||||||||||    
T  26033455 ccgacacgagaccgacacttgtaattacactgaattatgtga 26033496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 27945104 - 27945067
Alignment:
Q  389 gacacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgt 27945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 32308185 - 32308144
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||| || ||||||||||||||||||||    
T  32308185 ccgacacgacactgacacatacaattacactgaattatgtga 32308144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 2334314 - 2334274
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  2334314 cgacacgacaccgacacttgtaattacactaaattatgtga 2334274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 19992061 - 19992025
Alignment:
Q  392 acgacacggacacttataattacactgaattatgtga 428  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  19992061 acgacaccgacacttataattacactgaaatatgtga 19992025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 21568560 - 21568611
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacg 394  Q
    ||||||||||||| ||||||||| ||||| || ||||||| ||||||||||||    
T  21568560 tctatgaagcacagacactcctcagattaagcatgtcccg-gtgtccgacacg 21568611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 23490 - 23444
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23490 cgtgtccgacacgacaccgacacttataattacactgaattatgtga 23444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 23576 - 23535
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  23576 ccgaaacgacactgacacttataattacactgaattatgtga 23535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 25948876 - 25948922
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  25948876 cgtgtccgacacgacaccaacacttataattacactgaattatgtga 25948922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 11610629 - 11610545
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||  ||||||||| ||||||||||||||||  |||| ||||||||   ||||||| ||| |||||||||||||||||    
T  11610629 tctatgaagcacggacactcctcagattaggcgtgtcccg-atgtcggacacgac-ttgacacttgtaactacactgaattatgtga 11610545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 14209178 - 14209137
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  14209178 ccgacacgacactgacacttgtaattacactgaattatgtga 14209137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 25211648 - 25211574
Alignment:
Q  344 tatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtc--cgacacgacacggacacttataattacact 417  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||   |||||||||| ||||| ||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctg-gtgtcggggacacgacaccgacacatataattacact 25211574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 40052431 - 40052381
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacg 394  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||| ||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccg-gtgtcggacacg 40052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 49651778 - 49651821
Alignment:
Q  385 gtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||    
T  49651778 gtccgacacgacaccgacacttgtaattacagtgaattatgtga 49651821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 14216954 - 14216920
Alignment:
Q  390 acacgacacggacacttataattacactgaattat 424  Q
    ||||||||||||||||| |||||||||||||||||    
T  14216954 acacgacacggacacttgtaattacactgaattat 14216920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 14223083 - 14223049
Alignment:
Q  390 acacgacacggacacttataattacactgaattat 424  Q
    ||||||||||||||||| |||||||||||||||||    
T  14223083 acacgacacggacacttgtaattacactgaattat 14223049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 8039829 - 8039866
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattat 424  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  8039829 ccgacacgacaccgacacatataattacactgaattat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 21211413 - 21211376
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtccc 21211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 22774064 - 22774105
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  22774064 ccgacatgacaccgacacttataattacactgaaatatgtga 22774105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 28918062 - 28918025
Alignment:
Q  391 cacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  28918062 cacgacaccgacacttgtaattacactgaattatgtga 28918025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 32429331 - 32429415
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||| || ||||||||||||||||| ||||||  | || | ||||| ||||| || | |||||||| |||||||||||||||    
T  32429331 ctatgaagtacgaacactcctccgattagacgtgtcttg-gtattcgacatgacaccgatatttataattgcactgaattatgtga 32429415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 33153535 - 33153448
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtc---cgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||||   ||||| |||||||||  ||||   ||||||||||||||||||| |||||||||||||||||||||    
T  33153535 ctatgaagcacatacactccttgaattagacgtgtcccga-tgtcagacgacacgacacggacacttgtaattacactgaattatgtga 33153448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 44635612 - 44635522
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccg----cgtgtccgacac-gacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||  ||||||||| ||||||||||||| ||    |||||||||||| ||||| ||||||| |||||||||||||||| ||||    
T  44635612 ctatgaagcacggacactcctcagattaggcgtgtctcggtgtcgtgtccgacaccgacaccgacacttgtaattacactgaattacgtga 44635522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 12668417 - 12668456
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12668417 ccgacacgacaccgacacttataattacactgaattatgt 12668456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 32749820 - 32749860
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  32749820 cgacacgacactgacacttattattacactgaattatgtga 32749860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 36756341 - 36756377
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||| |||||||||||||||||||||||||||    
T  36756341 acacgacaccgacacttataattacactgaattatgt 36756377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 974817 - 974771
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||| ||||||||| ||||||| |||||||||||||| ||||||    
T  974817 cgtgtccaacacgacaccgacacttgtaattacactgaataatgtga 974771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 10535679 - 10535721
Alignment:
Q  337 taaattctatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    |||| |||||||||||| |||||||||| ||||||||||||||    
T  10535679 taaagtctatgaagcacgaacactcctcggattaggcgtgtcc 10535721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 11223790 - 11223831
Alignment:
Q  340 attctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    ||||||||||||||  ||||||||| ||||||||||||||||    
T  11223790 attctatgaagcacggacactcctcagattaggcgtgtcccg 11223831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 23058436 - 23058477
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| ||||||||||| |||||||||    
T  23058436 ccgacacgacaccgacacttgtaattacactggattatgtga 23058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 34784976 - 34785017
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||| |||||||||||| ||||||||||    
T  34784976 ccgacacgacaccgacacatataattacactaaattatgtga 34785017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 35056933 - 35056896
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattat 424  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  35056933 ccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 30717525 - 30717565
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  30717525 cgacacgacatcgacacttgtaattacactgaattatgtga 30717565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 2437030 - 2436946
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| |||||||||| |||||||||||||  | ||||| |||||||||| ||||| |||||| |||  |||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttg-gtgtcggacacgacaccgacacatataatcacaacgaattatgtga 2436946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 25888287 - 25888324
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattat 424  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  25888287 ccgacacgacacggagacttataattacactgaattat 25888324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 39698606 - 39698565
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  39698606 ccgacacgacactgacacttgtaattacactgaattatgtga 39698565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 6471842 - 6471924
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||  ||| |||| |||||||||||| |    ||||| |||||||||  |||| |||||||||||||||||||||||    
T  6471842 ctatgaagcacattcacccctcggattaggcgtgtaca---tgtcccacacgacacccacacatataattacactgaattatgtga 6471924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 21542095 - 21542056
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgt 426  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  21542095 ccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 27932354 - 27932304
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacg 394  Q
    ||||||||||||||||||||||  ||||||||||||| | ||||||||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctg-gtgtccgacacg 27932304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 31084393 - 31084347
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||  ||||||| |||||||| ||||||||||||    
T  31084393 cgtgtccgacacgacatcgacacttgtaattacattgaattatgtga 31084347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 7677770 - 7677729
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| ||||| |||||||||||||||    
T  7677770 ccgacacgacaccgacacttctaattgcactgaattatgtga 7677729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 21351899 - 21351940
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||| ||||| ||||||| |||||||||||||||||||||    
T  21351899 ccgacatgacaccgacacttgtaattacactgaattatgtga 21351940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 11596398 - 11596434
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcc 379  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattaggcgtgtcc 11596434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 19820326 - 19820366
Alignment:
Q  341 ttctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  19820326 ttctatgaagcacggacactcctctgattaggcgtgtcccg 19820366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 38464313 - 38464399
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgaca--cgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||||| ||||||| |||||||| ||||| ||||   | ||| ||||||||||||| || ||||| ||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccg-gtgtcggacatgtgccactgacacttataatttcaatgaataatgtga 38464399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 263366 - 263406
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtg 427  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  263366 ccgacacgacactgacacttataattacactgaattatgtg 263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 3947755 - 3947798
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatg 425  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  3947755 cgtgtccgacacgacactgacacttgtaattacactgaattatg 3947798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 16184950 - 16184913
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtccc 16184913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 30982872 - 30982913
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  30982872 ccgacacgacaccgacacttataattacactgaaatatgtga 30982913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 20633590 - 20633508
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgaca-cgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||| |||||||||  |||||||||||||  | |||||||||| |||||| ||||||| |||||||| ||||||||||    
T  20633590 ctatgaagcacgaacactccttggattaggcgtgtcttg-gtgtccgacaccgacac-gacacttgtaattacattgaattatgt 20633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Original strand, 54580023 - 54580058
Alignment:
Q  393 cgacacggacacttataattacactgaattatgtga 428  Q
    |||||| |||||||||||||||||||||||||||||    
T  54580023 cgacaccgacacttataattacactgaattatgtga 54580058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 12895105 - 12895151
Alignment:
Q  382 cgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||||    
T  12895105 cgtgtccgacacgacaccgacacttgtaattactttgaattatgtga 12895151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 12895214 - 12895252
Alignment:
Q  343 ctatgaagcacaaacactcctccgattaggcgtgtcccg 381  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccg 12895252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 29205588 - 29205550
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  29205588 tctatgaagcacgaacactcctcggattaggcgtgtccc 29205550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 4383432 - 4383391
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| |||| || |||||||||||||||||||||    
T  4383432 ccgacacgacactgacatttgtaattacactgaattatgtga 4383391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 22234884 - 22234925
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||| || ||||||||||||||||||||    
T  22234884 ccgacacgacaccgacacatagaattacactgaattatgtga 22234925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 28084587 - 28084546
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||||||| ||||||| |||||||| ||||||||||||    
T  28084587 ccgacacgacacagacacttgtaattacattgaattatgtga 28084546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 14126118 - 14126146
Alignment:
Q  400 gacacttataattacactgaattatgtga 428  Q
    |||||||||||||||||||||||||||||    
T  14126118 gacacttataattacactgaattatgtga 14126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 19312399 - 19312359
Alignment:
Q  388 cgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||||| || ||||||||||||||||||| ||||||    
T  19312399 cgacacgacaccgatacttataattacactgaatcatgtga 19312359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 30621752 - 30621788
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtc 378  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30621752 tctatgaagcacaaatactcctcggattaggcgtgtc 30621788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 37203372 - 37203290
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgt 426  Q
    ||||||||||||  ||||| ||| |||||| ||||||||| ||||| ||| ||||||  |||||| |||||||||| ||||||||    
T  37203372 tctatgaagcacggacacttctcggattagacgtgtcccg-gtgtcggacccgacac-tacacttgtaattacactaaattatgt 37203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 20261 - 20196
Alignment:
Q  358 actcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||| ||||||||||||||| |     ||||||||||| ||||||| |||||||||||||||||||||    
T  20261 actcctcggattaggcgtgtcccac-----cgacacgacactgacacttgtaattacactgaattatgtga 20196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 53245 - 53204
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  53245 ccgacacggcaccgacacttataattacactgaattatgtga 53204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 25765 - 25803
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  25765 acacgacaccgacacttataattacactaaattatgtga 25803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 15091 - 15053
Alignment:
Q  342 tctatgaagcacaaacactcctccgattaggcgtgtccc 380  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  15091 tctatgaagcacaaacactcctcggataaggcgtgtccc 15053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 3846 - 3884
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  3846 acacgacactgacacttgtaattacactgaattatgtga 3884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 23832 - 23794
Alignment:
Q  390 acacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  23832 acacgacaccgacacttgtaattacactgaattatgtga 23794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 14652 - 14611
Alignment:
Q  337 taaattctatgaagcacaaacactcctccgattaggcgtgtc 378  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  14652 taaattctatgaagcacgtacactccttcgattaggcgtgtc 14611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 44519 - 44560
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattatgtga 428  Q
    ||||||||| || ||||| |||||||||||||||||||||||    
T  44519 ccgacacgataccgacacatataattacactgaattatgtga 44560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Complemental strand, 70337 - 70304
Alignment:
Q  393 cgacacggacacttataattacactgaattatgt 426  Q
    |||||| |||||||||||||||||||||||||||    
T  70337 cgacaccgacacttataattacactgaattatgt 70304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 56987 - 56950
Alignment:
Q  387 ccgacacgacacggacacttataattacactgaattat 424  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  56987 ccgacacgacactgacacttatgattacactgaattat 56950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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