View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_6 (Length: 449)
Name: NF17007_low_6
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 34345179 - 34344753
Alignment:
| Q |
16 |
atatagacatatatggagccagaaccttattttccttcacctgcactctgctcaaccaggtacctaattttttcaataccactgtactactacacattta |
115 |
Q |
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| T |
34345179 |
atatagacatatatggagccagaaccttattttccttcacctgcactctgctcaaccaggtacctaattttttcaataccactgtactactacaaattta |
34345080 |
T |
|
| Q |
116 |
ttgtcatacatttgtttaattaatttgcttttatatatatgtaacgaatgaatgaaggtggtggtcgaaggagacggtggcggtggtgacaggaggaaac |
215 |
Q |
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| T |
34345079 |
ttgtcatacatgtgtttaattaatttgcttttatatatatgtaacgaatgaatgaaggtggtggtcgaaggagacggtggcggtggtgacaggaggaaac |
34344980 |
T |
|
| Q |
216 |
aagggcattgggtttgctcttgtgaaacgttttgctgagttgggactgagtgtagtgttaactgctagagacaagaagaaaggagaggatgctgtggaga |
315 |
Q |
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| T |
34344979 |
aagggcattgggtttgctcttgtgaaacgttttgctgagttgggactgagtgtagtgttaactgctagagacaagaagaaaggagaggatgctgtggaga |
34344880 |
T |
|
| Q |
316 |
tgattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatgctgattctattcaaacctttgcatcctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34344879 |
gaattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatgctgattctattaaaacctttgcatcctc |
34344780 |
T |
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| Q |
416 |
cttcaaagacaaatttggagccacctt |
442 |
Q |
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| T |
34344779 |
cttcaaagacaaatttggagccacctt |
34344753 |
T |
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