View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_8 (Length: 436)
Name: NF17007_low_8
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 491121 - 491535
Alignment:
| Q |
15 |
tcattaagtgtaagag-aactttccaccatttatcagaaaaaaattattacatgaacnnnnnnnnntta--atacaacgtaaacattattggctacaagg |
111 |
Q |
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| T |
491121 |
tcattaagtgtaagagtaactttccaccatttatcagacaaaa-ttaatacatgaacaaaaaaagaatataatacaacgtaaatattattggctacaagg |
491219 |
T |
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| Q |
112 |
actgagttcgatgctttaagtgctttt-gtattaaacaaaatcgtcattaagtgtaagaggaactttccactaaagcccattataaggaaaaccccaaaa |
210 |
Q |
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| T |
491220 |
actgagttcgatgctctaagtgctttttgtattaaacaaaatcatcattaagtgtaagaggaactttccactaaagcccattatacggaaaaccccaaaa |
491319 |
T |
|
| Q |
211 |
tgcccttactcaaatccttttaaatagcagcgtgaaatcacaatcagttggaaaaccctgcttactgagtaccttagtttt----cggtatcgcaaaact |
306 |
Q |
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| T |
491320 |
ggcccttactcaaatccttttaaatagcagcgtgaaatcacaattagttggaaaacccttcttactcagtaccttagttttcgcccggtatcgcaaaact |
491419 |
T |
|
| Q |
307 |
attaactgagaatccaatttctagggcagccggaaaaacatcagaacgatactaaaaattatcctgtttctcggagtccattatcacaacccttactcaa |
406 |
Q |
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| T |
491420 |
attaactgagaatccaatttttagggtagccggaaaaacattagaaccatactaaaaattatcctgtttctcggagtccattatcacaacccttactcaa |
491519 |
T |
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| Q |
407 |
ccttcggaaaaccttt |
422 |
Q |
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| T |
491520 |
ccgtcggaaaaccttt |
491535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 493374 - 493726
Alignment:
| Q |
11 |
atcatcattaagtgtaagag-aactttccaccatttatcagaaaaaaattattacatgaacnnnnnnnnnttaatacaacgtaaacattattggctacaa |
109 |
Q |
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| T |
493374 |
atcatcattaagtataagaggaactttccaccatttatcagaaaaaa-ttaatacatgaacaaaaaaaa-ttaatacaacgtaaacattatttgctacaa |
493471 |
T |
|
| Q |
110 |
ggactgagttcgatgctttaagtgcttttgtattaaacaaaatcgtcattaagtgtaagaggaactttccactaaagcccattataaggaaaaccccaaa |
209 |
Q |
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| T |
493472 |
ggactgagttcgatgctccaagtgcttttgtattaaacaaaatcgtcattaagtgtaagaggaactttccactaaagcccattataaggaaaaccccaaa |
493571 |
T |
|
| Q |
210 |
atgcccttactcaaatccttttaaatagcagcgtgaaatcacaatcagttggaaaaccctgcttactgagtaccttagttttcggtatcgcaaaactatt |
309 |
Q |
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| T |
493572 |
aggcccttactcaaatccttttaaatagcaacgtgaaatcacaattagttggaaaaccctgcttactcagtaccttagttttcggtatcgcaaaactatt |
493671 |
T |
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| Q |
310 |
aactgagaatccaatttctagggcagccggaaaaacatcagaacgatactaaaaa |
364 |
Q |
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| T |
493672 |
aactgagaatccaatttctagggcagctggaaaaacatcatgaccatactaaaaa |
493726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 494017 - 494083
Alignment:
| Q |
356 |
tactaaaaattatcctgtttctcggagtccattatcacaacccttactcaaccttcggaaaaccttt |
422 |
Q |
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| T |
494017 |
tactaaaaattatcctgtttctcggagtccattatcacaacccttactcaaccttcggaaaaccttt |
494083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 491114 - 491147
Alignment:
| Q |
148 |
aaaatcgtcattaagtgtaagaggaactttccac |
181 |
Q |
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| T |
491114 |
aaaatcgtcattaagtgtaagagtaactttccac |
491147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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