View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17007_low_9 (Length: 420)
Name: NF17007_low_9
Description: NF17007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17007_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 2504923 - 2504650
Alignment:
| Q |
17 |
ttgcatcagagaatgtttcatcaaatgtatgcaatatatgaaaagacgatatataagaatcaaaagtagaagactagcacggataggataactcaaatgg |
116 |
Q |
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| T |
2504923 |
ttgcatcagagaatggttcatcaaatgtatgcaatatatgaaaagacgatatataagaatcaaaagtagaagactagcaaggataggataactcaaatgg |
2504824 |
T |
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| Q |
117 |
ttcgaatcaagtgttaaagaagaagttgaagaagttaaaaggttacagtttaaaccctagtgaagtagaaaatattgatatagcaaatactatactagga |
216 |
Q |
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| T |
2504823 |
ttcgaatcaagtgttaaagaagaagttgaagaagttaaaaggttagagtttaaaccctagtgaagtagaaaatattgatatagcaaatactatactagga |
2504724 |
T |
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| Q |
217 |
ccaagttggttgacagaagcattagttaagggactgaaatgtaaggaatattaatattaattagttatgagatt |
290 |
Q |
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| T |
2504723 |
ccaagttggttgacagaagcattagttaagggactgaaatgtaaggaatattaatattaattagttatgagatt |
2504650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 2504587 - 2504525
Alignment:
| Q |
355 |
gtacaagatcaaagtgccttatacagtacaataatagtacatgatcaacactagtcattattaaaa |
420 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
2504587 |
gtacaagatcaaagtgccttatgcagtacaata---gtacaggatcaacactagtcattattaaaa |
2504525 |
T |
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