View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17008_high_1 (Length: 546)
Name: NF17008_high_1
Description: NF17008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17008_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 2798335 - 2797802
Alignment:
| Q |
1 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798335 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
2798236 |
T |
|
| Q |
101 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798235 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaaca |
2798136 |
T |
|
| Q |
201 |
gtttgggatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2798135 |
gtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgattctcat |
2798036 |
T |
|
| Q |
301 |
caatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatgtac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2798035 |
caatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacacatccatgtac |
2797936 |
T |
|
| Q |
401 |
tctgtcatcccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaat |
500 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797935 |
tctgtcatcccatgagaaatctggagttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaat |
2797836 |
T |
|
| Q |
501 |
tgatgaataaatttatgaaggatcctccccatct |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2797835 |
tgatgaataaatttatgaaggatcctccccatct |
2797802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 1673390 - 1673816
Alignment:
| Q |
1 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673390 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
1673489 |
T |
|
| Q |
101 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1673490 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaatca |
1673589 |
T |
|
| Q |
201 |
gtttgggatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673590 |
gtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
1673689 |
T |
|
| Q |
301 |
caatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatccatgt |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1673690 |
caacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatccatgt |
1673789 |
T |
|
| Q |
399 |
actctgtcatcccatgagaaatctgga |
425 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1673790 |
actctgtcatcccatgagaaatctgga |
1673816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 1675865 - 1676291
Alignment:
| Q |
1 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675865 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
1675964 |
T |
|
| Q |
101 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1675965 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaatca |
1676064 |
T |
|
| Q |
201 |
gtttgggatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1676065 |
gtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
1676164 |
T |
|
| Q |
301 |
caatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatccatgt |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1676165 |
caacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatccatgt |
1676264 |
T |
|
| Q |
399 |
actctgtcatcccatgagaaatctgga |
425 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1676265 |
actctgtcatcccatgagaaatctgga |
1676291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 1682393 - 1682819
Alignment:
| Q |
1 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682393 |
ctaaggcattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggact |
1682492 |
T |
|
| Q |
101 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1682493 |
ttgtaaggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaacca |
1682592 |
T |
|
| Q |
201 |
gtttgggatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682593 |
gtttgggatccaagccacctatcagaaacaacacggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcat |
1682692 |
T |
|
| Q |
301 |
caatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatccatgt |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1682693 |
caacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatccatgt |
1682792 |
T |
|
| Q |
399 |
actctgtcatcccatgagaaatctgga |
425 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1682793 |
actctgtcatcccatgagaaatctgga |
1682819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 534
Target Start/End: Complemental strand, 29267502 - 29266975
Alignment:
| Q |
7 |
cattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggactttgtaa |
106 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| || || ||||||||||||||||||||||||| |||||| || ||| || ||| |
|
|
| T |
29267502 |
cattgtcatcagaattatatagcactgtgaagacttgtgtctgtactgggttgaaatgcttaaaatcctgataaagagcttcatatgatggatttcttaa |
29267403 |
T |
|
| Q |
107 |
ggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaacagtttgg |
206 |
Q |
| |
|
||| || || || ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
29267402 |
ggcagtaactggaagtggttgcagatccaatagttcagtaggcggaggatacttttcaggtaaaattagatgcctgaaagaaacaggcagaacagtttgg |
29267303 |
T |
|
| Q |
207 |
gatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcatcaatat |
306 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || ||||| || ||| | ||||||||||| || ||||| ||||| | |
|
|
| T |
29267302 |
gatccaagccatttatcagaaacaacacggatgaagtattgaggaggaagaggctcgtatatcggcactgtaaaattcaaagtgtggtcctcctcaatgt |
29267203 |
T |
|
| Q |
307 |
attgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatgtactctgtc |
406 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
29267202 |
actgttttttcagcaaaaaatactcatgatgaaggatatattcaccatcattatcctccacaatcacccagaacggctcaacatatccatgcattctgtc |
29267103 |
T |
|
| Q |
407 |
atcccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaattgatga |
506 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||||| |||||| |||||||| |
|
|
| T |
29267102 |
atcccatgcaaaatctggagttattgtgagctcaacccccaaaactgtgcgagtaattggctgcacatgtgctgcaaggttcagttttggaaattgatgg |
29267003 |
T |
|
| Q |
507 |
ataaatttatgaaggatcctccccatct |
534 |
Q |
| |
|
|||||| |||||||| |||||||||||| |
|
|
| T |
29267002 |
ataaatctatgaagggtcctccccatct |
29266975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 520
Target Start/End: Original strand, 29185844 - 29186354
Alignment:
| Q |
7 |
cattgtcatcagaattatacagagctgtgaagacttgtgtctgtataggattaaaatgcttaaaatcctgataaagagtttcataagaaggactttgtaa |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || ||| || ||| |
|
|
| T |
29185844 |
cattgtcatcagaattatacagtactgtgaagacttgtgtctgtactggattgaaatgcttaaaatcctgataaagagcttcatatgatggatttcttaa |
29185943 |
T |
|
| Q |
107 |
ggctgtcacaggcagtggctgcagatccaacagctcagtaggtggaggatacttttcaggtaaaattatgtgcctgaaagaaacaggtaaaacagtttgg |
206 |
Q |
| |
|
||| || || || ||||| |||||||||| || |||||| |||||||| |||||||||||||| | || ||| |||||||||||||||| |||||| |
|
|
| T |
29185944 |
ggcagtaaccggaagtggttgcagatccagtagttcagta---ggaggatagttttcaggtaaaatgagatgactgcaagaaacaggtaaaactgtttgg |
29186040 |
T |
|
| Q |
207 |
gatccaagccacctatcagaaacaactcggataaagtattgaggaggaagaggttcatatattggtactatgaaattcaaagtatgatcctcatcaatat |
306 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||||||||| | | ||||| ||| ||||||||||||| |||||||| | ||| | |
|
|
| T |
29186041 |
gatccaagccatttatcagaaacaacacggatagagtattgaggaggaagacacttgtctattgacactgtgaaattcaaagtgtgatcctccttaatgt |
29186140 |
T |
|
| Q |
307 |
attgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatgtactctgtc |
406 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| | | | ||||| |||||||||| ||||||||| |||||||||||||||||||| | | |||| |
|
|
| T |
29186141 |
gctgttttttcagcaaaaaatactcatgatgaaggatctgtgcaccatctttatcctccataatcacccagaacggctcaacatatccatgcattatgtc |
29186240 |
T |
|
| Q |
407 |
atcccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaattgatga |
506 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| ||||||| | |||| ||||| ||||||| || ||||||||| |||||| |||||| | |
|
|
| T |
29186241 |
atcccatgcaaaatctggagttattgtgagctcaacccctaaaactgcactagtagttggccgcacatgtgcgacaaggttcagttttggaaattgacgg |
29186340 |
T |
|
| Q |
507 |
ataaatttatgaag |
520 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
29186341 |
ataagtttatgaag |
29186354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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