View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17008_low_3 (Length: 299)
Name: NF17008_low_3
Description: NF17008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17008_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2798326 - 2798606
Alignment:
| Q |
1 |
aatgccttagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798326 |
aatgccttagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
2798425 |
T |
|
| Q |
101 |
ttgtttatgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaac |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
2798426 |
ttgtttatgtagcacccattgaagctcttgccaaggaacggtatcgtgattgggagaagaaatttgggggtggtcttaaatttgcagtagttgaattaac |
2798525 |
T |
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| Q |
201 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
281 |
Q |
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| T |
2798526 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
2798606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 1673399 - 1673119
Alignment:
| Q |
1 |
aatgccttagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1673399 |
aatgccttagttgctgctccgacagggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
1673300 |
T |
|
| Q |
101 |
ttgtttatgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaac |
200 |
Q |
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| T |
1673299 |
ttgtttatgaagcacccattgaagctcttgccaaggaacggtatcgtgattgggagaagaaatttgggggtggtcttaaattagcagtagttgaattaac |
1673200 |
T |
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| Q |
201 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
281 |
Q |
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| T |
1673199 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
1673119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 1675874 - 1675594
Alignment:
| Q |
1 |
aatgccttagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1675874 |
aatgccttagttgctgctccgacagggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
1675775 |
T |
|
| Q |
101 |
ttgtttatgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaac |
200 |
Q |
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| T |
1675774 |
ttgtttatgaagcacccattgaagctcttgccaaggaacggtatcgtgattgggagaagaaatttgggggtggtcttaaattagcagtagttgaattaac |
1675675 |
T |
|
| Q |
201 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
281 |
Q |
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| T |
1675674 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
1675594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 1682402 - 1682122
Alignment:
| Q |
1 |
aatgccttagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1682402 |
aatgccttagttgctgctccgaccgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcatcaaaaagggtctgatagtgtcatgcgtg |
1682303 |
T |
|
| Q |
101 |
ttgtttatgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaac |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
1682302 |
ttgtttatgtagcacccattgaagctcttgccaaggaacggtatcgtgattgggagaagaaatttgggggtggtcttaaattagcagtagttgaattaac |
1682203 |
T |
|
| Q |
201 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
281 |
Q |
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| T |
1682202 |
tggagaaacaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
1682122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 29267506 - 29267779
Alignment:
| Q |
8 |
tagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtgttgttta |
107 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| | | |||||||||||||| |||||||| |
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| T |
29267506 |
tagttgctgctccaactgggagtggcaagactatatgtgcagaatttgcaattttgaggaaccatcaaaaattgccggatagtgtcatgcgcgttgttta |
29267605 |
T |
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| Q |
108 |
tgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaactggagaa |
207 |
Q |
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| | ||| || |||||||||||||||||||| |||||| |||||||||||| ||||| || ||||||||||| ||| ||||| || ||||| |||||| |
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| T |
29267606 |
tattgcacccgttgaagctcttgccaaggaaaggtatcgtgattgggagaaaaaattcgggggtggtcttaagttgaaggtagtggagttaaccggagaa |
29267705 |
T |
|
| Q |
208 |
acaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgctttatc |
281 |
Q |
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|| | || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
29267706 |
accgctactgatctgaaactgcttgagaaaggtcaggttattattagtactccagagaagtgggatgctttatc |
29267779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 29185840 - 29185572
Alignment:
| Q |
8 |
tagttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaagggtctgatagtgtcatgcgtgttgttta |
107 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| | | | | | | || ||||| ||||||||| |
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| T |
29185840 |
tagttgccactccaactgggagtggcaagactatatgtgcagagtttgcaattttgaggaatcatcagataaataccaacaatgacatgcttgttgttta |
29185741 |
T |
|
| Q |
108 |
tgtagcatccattgaagctcttgccaaggaacggtatcatgattgggagaagaaatttggaggtggtcttaaattggcagtagttgaattaactggagaa |
207 |
Q |
| |
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| | || ||| |||| ||||||||||| ||| ||| | ||| ||||| ||||||||||| |||||| || ||| ||||||||||||| |||||| |
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| T |
29185740 |
tcttacacccaatgaaactcttgccaagcaacagtaccttgactgggataagaaatttgggaatggtctcaagttgaaggtagttgaattaagtggagat |
29185641 |
T |
|
| Q |
208 |
acaacaacagatctgaaactgcttgagaaaggtcagattattattagtactccagagaaatgggatgct |
276 |
Q |
| |
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|| || |||| || || |||| | |||| ||||||||| ||||||| ||||||| |||||||||| |
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| T |
29185640 |
ccacaaatagatttggaattgctgagggaaggacagattattgttagtacaccagagagatgggatgct |
29185572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 11698216 - 11698286
Alignment:
| Q |
11 |
ttgctgctccgactgggagtggtaagactatatgtgcagaatttgcaattttgaggaatcataaaaaaggg |
81 |
Q |
| |
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|||||||||||||||| ||||| ||||| | |||||||||| ||||||||||||| |||||| |||||||| |
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| T |
11698216 |
ttgctgctccgactggaagtggaaagaccacatgtgcagaaattgcaattttgagaaatcatcaaaaaggg |
11698286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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