View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17009_low_1 (Length: 397)
Name: NF17009_low_1
Description: NF17009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17009_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 193 - 385
Target Start/End: Original strand, 35885 - 36077
Alignment:
| Q |
193 |
gagggttctttgtagactttgagttagtgtggattgctctccttgtatttcttaggtggtgtgttttccctcattcttagatttgcttggttccggccat |
292 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35885 |
gaggcttctttgtagactttgagttagtgtggattgctctccttgtatttcttaggtggtgtgttttccctcattcttagatttgcttggttcctgccat |
35984 |
T |
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| Q |
293 |
tcgaaccttttgtctttcatggggtcttcttgagtttacaatgaggggttattggtgttggcaccataaggggtggttgttgtggttttgatg |
385 |
Q |
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| T |
35985 |
tcgaaccttttgtctttcatggggtcttcttgagtttacaatgaggggttattggtgttggcaccataaggggtggttgttgtggttttgatg |
36077 |
T |
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Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 198 - 385
Target Start/End: Original strand, 14193030 - 14193217
Alignment:
| Q |
198 |
ttctttgtagactttgagttagtgtggattgctctccttgtatttcttaggtggtgtgttttccctcattcttagatttgcttggttccggccattcgaa |
297 |
Q |
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| T |
14193030 |
ttctttgtagactttgggttagtgtgggttgttctccttgtatttcttaggtggtgtgttttccctcaatcatatatttgcttggttcctgccattcaaa |
14193129 |
T |
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| Q |
298 |
ccttttgtctttcatggggtcttcttgagtttacaatgaggggttattggtgttggcaccataaggggtggttgttgtggttttgatg |
385 |
Q |
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| T |
14193130 |
cctttagtctttcatggggtcatcttgagtttacaatgcgcagctattggtgttggcaccataagaggtggttgttgtggttttgatg |
14193217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 198 - 385
Target Start/End: Original strand, 25646778 - 25646965
Alignment:
| Q |
198 |
ttctttgtagactttgagttagtgtggattgctctccttgtatttcttaggtggtgtgttttccctcattcttagatttgcttggttccggccattcgaa |
297 |
Q |
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|||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||| ||||||| | ||||||| || |
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| T |
25646778 |
ttctttgtagactttgggttagtgtgggttgttctccttgtatttcttaggtggtgtgttttccctcaatcatagattttcttggtttctgccattcaaa |
25646877 |
T |
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| Q |
298 |
ccttttgtctttcatggggtcttcttgagtttacaatgaggggttattggtgttggcaccataaggggtggttgttgtggttttgatg |
385 |
Q |
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| T |
25646878 |
cctttagtctttcatggggtcatcgtgagtttacaatgagcggctattggtgttggcaccataaggggtggttgttgtgcttttgatg |
25646965 |
T |
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