View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17009_low_4 (Length: 283)
Name: NF17009_low_4
Description: NF17009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17009_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 11509793 - 11509519
Alignment:
| Q |
9 |
acatcatcaacaatggggttgacctgaaaaagcaaaaaggtatgattttgagagtgaaaaataaaaacccattagaggaagagtatgaaaaggggagaga |
108 |
Q |
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| T |
11509793 |
acatcatcaacaatggggttgacctgaaaaagcaaaaaggtatgattttgagagtgaaaaataaaaacccattagaggaagagtatgaaaaggggagaga |
11509694 |
T |
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| Q |
109 |
aaggttacaatgtcgaaaacagaagagaaatcgatgcgtggacgagatttgagggagagaagttcggtttgagtgaggttggataaatggtaggttttga |
208 |
Q |
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| T |
11509693 |
aaggttacaatgtcgaaaacagaagagaaatcgatgcgtggacgagatttgagggagagaagttcggtttgagtgaggttggataaatggtaggttttga |
11509594 |
T |
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| Q |
209 |
ttggatttgccatggaaatggaacagcgtgttcggtaattgatggtattgctaacagagaaagaggttctgtggt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11509593 |
ttggatttgccatggaaatggaacagcgtgttcggtaattgatggtattggtaacagagaaagaggttctgtggt |
11509519 |
T |
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